Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | MNYFAVLCIFSCICLWQFSDAAPFISVQSSSQSRSQKVMNGMLRTLYDYSVQDSVNDATGHLIHTHKADFNSDVMSPEEIERVRQQLNMA |
1 | 4z29A1 | 0.01 | 0.01 | 0.78 | 0.87 | DisCoVER | | LKLRVA-SDITL--SP--TNMGQYGYTLVIDSHAVVPSLTPGAHSFGVTVTEG------GQAVG---Q-TEKGGT---IV-WLSAEDKA- |
2 | 2debA | 0.04 | 0.03 | 0.83 | 0.83 | DEthreader | | VFNP--F---AF--N--PDYNDQLRAT-LLVFD---VLNI-PIAVFCLCLDDF-PKDLIHLHTGDGTRWFDKSFFVLRFFNEVFRDSTQP |
3 | 4gn2A2 | 0.09 | 0.09 | 0.96 | 0.56 | CEthreader | | AKLPASKDAQQMTVSILPHFAAGDWAVQGKTGTGSFIDARGAKAPLGWFIGWATHEER----RVVFARMTAGGAAGAQPAGPAARDAFLK |
4 | 1mm5A | 0.07 | 0.07 | 0.98 | 0.88 | EigenThreader | | ADEWMTTFRENIAQTWQQPEHARWDEWHGLYAMAFKDSW--NKWEPIAGYGWESTWRPLAFHLGLGFTAGVTARDNWNYIPIPGTYNNGN |
5 | 4z29A1 | 0.15 | 0.10 | 0.68 | 0.26 | HHpred | | ---------------------TS-HAVPATSRFRVPSLTPG----AHSFGVT--VTEG-GQAVGQTEKGGTIVWLSATEDKALVDGVARV |
6 | 6csxB | 0.12 | 0.12 | 0.98 | 0.75 | MRFsearch | | -RYLVLYLIIVVGMAYLFVRLQGVFMTMVQTQERTQKVLNNNVESVFAVNGFGFAGRQNTGIAFVSLKDWAEENKVEAITMRATRAFSQ- |
7 | 5d98A1 | 0.14 | 0.13 | 0.94 | 0.32 | FFAS-3D | | -RKIIQIGIHFQVCC-MFCDSDRFVLIEGRKRGTAVSLQNELLCDIFDREEKGKLGNSCKIFVFSYDGRLNCEGPMEEQKLRIFSFL--- |
8 | 4jvcA1 | 0.15 | 0.14 | 0.96 | 0.68 | SPARKS-K | | AIPPSFCDTVSSVLLDDFNM----VSLIRTSPADSLATIKIDIAITIDEEISRFNQCVLGKVYCYYNTALESERSFLRFLESARQRLREL |
9 | 1rp5A | 0.11 | 0.08 | 0.71 | 0.63 | CNFpred | | --SVTQTQMLRAFTAIAND--GVMLEPK-------------FISALYDPND---------QSVRKSQKEIVGNPVSKEAASVTRDHMVMV |
10 | 6i7sG | 0.02 | 0.02 | 0.91 | 0.83 | DEthreader | | KVALDS-SSKAHNFGLTIKG-TTSTETEA-G-LEFISTV--VCMQMDKDEAPFRQFEKKSQKRKESVLAGCEFPLHQENSEMCKVVFA-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|