>PF05734 (225 residues) VVPVVGLADDDVEQWRRALDSFLVHGKTADTIRKLSRLFKGDGHYGLLASLVIMQSAFGH SSKFRHKLSVMEVIQFSDKTAVTLYRKLKDHKHETGIEQVFWDCKQRLALLLENECGCVD CQRLASVLQRDRGVMRPPNLNPHQKHSQAATFLTWIYNQAVLNLNVAVLEDQIEVLFIKP DEFFDFAPDMRDELSLLTSCLHFCWLHFILKHYVHLELDVIQEHI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VVPVVGLADDDVEQWRRALDSFLVHGKTADTIRKLSRLFKGDGHYGLLASLVIMQSAFGHSSKFRHKLSVMEVIQFSDKTAVTLYRKLKDHKHETGIEQVFWDCKQRLALLLENECGCVDCQRLASVLQRDRGVMRPPNLNPHQKHSQAATFLTWIYNQAVLNLNVAVLEDQIEVLFIKPDEFFDFAPDMRDELSLLTSCLHFCWLHFILKHYVHLELDVIQEHI | |||||||||||||||||||
1 | 2r2iA | 0.10 | 0.07 | 0.67 | 0.65 | DisCoVER | -GNVELSA---T-ECHQWY-------------KKFMTECPSGQLTLFKQFFG-LK-NL--------SPSANKYVEQMFETF---DFN-KDGYIDFEYVAALS-LV----------------------L--KDQKLRWYFKLYDVGCIDRGELLNIIK--A-----IRARCEFTNMVFIDINGGELSLEEFMEGVLLDILTRSLD--LTHIVKLI--QN--D---- | |||||||||||||
2 | 4av3A | 0.07 | 0.05 | 0.78 | 0.83 | DEthreader | -----------LG-AA--FA--VSSIRGADFLAHETKAIFVAAGIIAMFDRVGGGVYTKADMDD--D-GDV-GLADLLESFVGAIVSSII----------------YPIFFALV------GLGCSMLGILYVILISLWTALVV--FIIGIFSGILIGFWAEYTSGSV---TLTLVLGILF--ADYFAGYGVAIAALGMLSF-VATSVSVDSYGPIADNAGGISEM | |||||||||||||
3 | 7kdtA | 0.06 | 0.05 | 0.93 | 0.57 | CEthreader | FNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFDECIRLRPELAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQD-------------LDRGLELISKAIEIDNKCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQTEVAKK--- | |||||||||||||
4 | 3msvA | 0.10 | 0.09 | 0.87 | 0.63 | EigenThreader | TEDISTLPKDFHAAYSSALLAVSELSYIDAAIERAQLGLPGNESRLFLALARAYLEKVRVLVWRHDNEETQLVNPYIEKAIQYLRPLAQDSTEYFDACSIITALWLKSAEYYMDLLDNSKASSWLNNSVDTWNVIYTLDKSPERLLKLADIKMDLAQIV----QDEASQDNYLKEACNAIKEAQGSGVEDYVEFVEAYS-------------------------- | |||||||||||||
5 | 2pffB | 0.15 | 0.14 | 0.92 | 0.36 | HHpred | -VFTQGLNILENTPDKDQLAHYVVTAKLLGFTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPPSILEDSLENNEPMLSISNLVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSRKLKFSFLSPFHSHLLVPASDLIN--------KDLVKNNVSF----- | |||||||||||||
6 | 5i9dA | 0.11 | 0.09 | 0.88 | 0.42 | MRFsearch | --------APTVVTYNTLIDGLCKAGKLDEALKLFEEMVEIKPDVVTYNTLIDGLCKA---GKLDEALKLFEEMVEKLDEALKLFEEMVEKGIKPDVVTYLDEALKLFEEMVEKGPDVVTYSTLIDGLCKAG------------KLDEALKLFEEMVEKG-----IKPNVVTYSTLIDGLCKAGKLKPNVVTYNTLIDGLCKAGTYNTLIDGLCKEALKLFEEMV | |||||||||||||
7 | 4p1nA | 0.11 | 0.08 | 0.76 | 0.75 | FFAS-3D | ---------ESLSAKAFVMYSF-----AEMKFSQILNLIPAPELKKLCMESLLLYLK------------SLTILASSMKLTSKWWYENESKNCTLKLNILVQWIRDRFNECLD------KAEFLRLKLHTLNQSEDPQ--VLDDPTIFVEKL---IYDRAL-----DISRNAARLEMEG---------NYNTCELAYATSLWM--LEILLKEMIRKYVSSIANRL | |||||||||||||
8 | 6w2rA | 0.09 | 0.08 | 0.87 | 0.60 | SPARKS-K | -----GTTEDERRELEKVARKAIEAAEVREQLQRALEIARESGTLALDVALRVAQEAAKRGNK--------DAIDEAAEVVVRIAEES----NNSDALEQALRVLEEIAKAVLKSEKTEDAKKAVKLVQEAYKAQRAIEAAKRTGTPDVIKLAIKLAKLAARAARPKSVNEALKKIVKAIQEAVESLREAEES------------KREKARERVREAVERAEEV- | |||||||||||||
9 | 4c0oA | 0.10 | 0.08 | 0.87 | 0.78 | CNFpred | -----------CRCLRFAVRCVGKAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGME---GCRQGLLDMLQALCIPTFQLLEQQGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIAS------TTLDHRDANCSVMRFLRDLIHTGVAN-DFELRKELIGQVMNQ---------LGQQLVSQLLHTCTLPDVAEVLWEIMQVDRPTFCRWL | |||||||||||||
10 | 5mpbZ | 0.11 | 0.08 | 0.80 | 0.83 | DEthreader | -----GEEDAVDLLLEIESIDKLPFVDENTFQRVCQYMVACVPDVFLKAYSIYDAIVFTAYILAAQKTSFEYE-QGT-YMGQGSCAYTGDVLLDEEKEAGIVDELAYAVLGIALAL----L------M---EHIRRVPMGIVSVDPQMKVFDTLTRFSHDADLFITRMTMDVFNDAHVLNKV-------------------------GGQRPKNHGERAELETDE | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |