>PF05716 (692 residues) TPNKSLSTVASELVNETVSACSKNTTSDKAPGSGDRASGLLRSPPNLKYKTTLKIKESTK ESKGPDDKPPSKKSFFYKEVFESRNAGDAKEGGRSLPGERKMFRGQERPDDFTASVSQGI MTYANSVVSDMMVSIMKTLRIQVKDTTIATILLKKVLLKHAKEVVSDLIDSFMKNLHNVT GTLMTDSDFVSAVKRSLFSHGSQKATDIMDAMLGKLYTVMFAKKPPENLRKTKDKSESYS LVSMKGMCDPKHQNTNFASMKSEGKLREKIYSPASKPEKEKTCAETLGEHIIKEGLTFWH KNQQKEGKSPGFQRATFAAPNKQYKPVPDIPLGYPLDTCNLSPPMHHREKPENFVCDSDS WAKDLIVSALLLIQYHLAQGGSMDPQSFLEAAGSTNLPANKSPVVPDESSLKSPQMGGDQ EEAEKKDLMSVFFNFIRNLLGETIFKSDRSSEPKVPEQPIKEEYSHQCERPITPSPIKLS EGDETGGTFAGLTKMVANQLDGHMNGQMVEHLMDSVMKLCLIIAKSCDSPLAELGDDKSG DASRPTSAFPDSLYECLPVKGTGTAETLLQNAYQAIHNELRGISGQPPEGCTAPKVIVSN HSLSDTVQNKQLQAVLQWVAASELNVPILYFAGDDEGIQEKLLQLSAAAVDKGRSVGEVL QSVLRYEKERQLDEAVGNVTRLQLLDWLMVNL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TPNKSLSTVASELVNETVSACSKNTTSDKAPGSGDRASGLLRSPPNLKYKTTLKIKESTKESKGPDDKPPSKKSFFYKEVFESRNAGDAKEGGRSLPGERKMFRGQERPDDFTASVSQGIMTYANSVVSDMMVSIMKTLRIQVKDTTIATILLKKVLLKHAKEVVSDLIDSFMKNLHNVTGTLMTDSDFVSAVKRSLFSHGSQKATDIMDAMLGKLYTVMFAKKPPENLRKTKDKSESYSLVSMKGMCDPKHQNTNFASMKSEGKLREKIYSPASKPEKEKTCAETLGEHIIKEGLTFWHKNQQKEGKSPGFQRATFAAPNKQYKPVPDIPLGYPLDTCNLSPPMHHREKPENFVCDSDSWAKDLIVSALLLIQYHLAQGGSMDPQSFLEAAGSTNLPANKSPVVPDESSLKSPQMGGDQEEAEKKDLMSVFFNFIRNLLGETIFKSDRSSEPKVPEQPIKEEYSHQCERPITPSPIKLSEGDETGGTFAGLTKMVANQLDGHMNGQMVEHLMDSVMKLCLIIAKSCDSPLAELGDDKSGDASRPTSAFPDSLYECLPVKGTGTAETLLQNAYQAIHNELRGISGQPPEGCTAPKVIVSNHSLSDTVQNKQLQAVLQWVAASELNVPILYFAGDDEGIQEKLLQLSAAAVDKGRSVGEVLQSVLRYEKERQLDEAVGNVTRLQLLDWLMVNL | |||||||||||||||||||
1 | 3uekA | 0.17 | 0.12 | 0.67 | 1.21 | HHpred | -----------------------------VPPNLPPDKKWLGTPIEEMRK----MP--RCGVRLPLLRPSASHTVTVRV--DLLRAG---EVPKPFPTHY------------KDLWDNKHMPCSE----------QNLYPVEDRTAGSRWELIQTALLNRPQN-LKDAILKYNVAYSK-------KWDFT-ALVD-FWDKLEAEAQHILPDMVKIALPNICTQPIP-LLKQKMSQEQIASLLANAFFCYSSYPDINFNRLFEGRS--------SRKPEK-LKTLFCYFRRVTEK----------KPTGLVTFTRQSLE-------DFPEW------ERC--DKPLT------RL---------------------HVTYEGTI-----EGN-GRGMF-ANRFVG---GGVT---GAGLVQEE--------IRFLIVSRLFTEVLDHNECLII-TGTEQYSEYTETYRWARSHEDSEQRCCTEIVAIDALHF----------RRYLDQFVPEVRRELNKAYCGFLRPGV-P------------PENLSAVATGNWGC------G--------AF---------------------------------GGDARLKALIQLLAAAAAERDVVYFTFGDSELMRDIYSMHTFLTERKLNVGKVYRLLLRYYREECRDSS-P-GPDTKLYPFIYHAA | |||||||||||||
2 | 6tnfB | 0.11 | 0.10 | 0.87 | 1.07 | FFAS-3D | -PLDQLRHVEGTVILHIVSAINQDIGEELLKTEQQKDPGKALCPFSVRLQEQIKDLQILQASKFLQDLCPQQTAVILEVVKNSAFGWDHVTQGLVDLGFSLMESYEPMPAQQACKLGASILLETFKVRSDILEQVLNRVLTKAASPVSHFIDLLSNIVVSPIDTVQGLLRAVQP-LLKVSMSVR--DSLILVLQKAIFSRQLDARKAAVAGFL----LLLRNFKILTQVQADVHEAEILGSLRRCLSQQADVRLMLYEGFYDVLRRN-----------------SQLASSILLSQIKQYYLPQQDLLPPLKLEGCIMAQGDQIFEPLAHLLCCIQHCLAWYKSTVHLEEEDVGFEQNFEEMLESVVMGICEVLIEYNFKIGNFSKNKFYNKLSEISFLSMGFVSTLLTALFRDNAQSHEESLASSTEFMRYAVSVALQKVQQL-------------------------EEMGQTDGPDGQNPEKMFQNLCKITRVLLWRYTSIISLLCLEGLLRIFNTMQQLYAARIPQFLQALDITDGDAEEADINV-------------TEKAAFQIRQFQRSLVNQLSSAEDDFNS--------------------KETQLLITILSTLSKLLD-----PGSQQFLQFLTWTVKICKENALEDLSCCKGLLTLLFSLHVCLLVLGQADKVLVDWLIKRL | |||||||||||||
3 | 4fgvA | 0.10 | 0.06 | 0.61 | 1.27 | CNFpred | MNEETEKRFLVTVIKDLLGLTEMK-------------------------------------------RGKDNKAVVASNIMYIV------------------------------GQYPRFLKAHWKFLKTVVNKLFEFMHESHGVQDMACDTFIKIAKQCRRHFVAPFIEEIIRNIGKITCDLTQVHTFYEACGYMVSAQNRNQQERLLAELMAIPNAAWDE-MNPGILHEPDTIKIIGNIMKTN-----------VSACSSIGP------------------FFPQIGRLYNDMLQMYAATSQLISEA---------------------------------VARDGEIATKM---PKVRGLRTIKKEILKLVETFVEKAE--DLQAVRSQ------------------------------------MIPGLLDSVLVDYNRNVPGARDAE-------------------------------------VLKAMTVIITRLQGLME-DQVPAIMENVFECTLDMINKDFAEYPEH---------------RVEFFNLL--------RAINLYCFPALLKL----------------------------DNRQFKFVIDSCMWASKHRDVETA------GLNMCLELINNIAEKTDTCNAFFNQFFIRILQDVFFVLTGFKTQSMLLMRLFYFV | |||||||||||||
4 | 1vt4I | 0.07 | 0.06 | 0.86 | 0.65 | DisCoVER | LRPAKNVL--IDGVLGSGKTNLKNCLVLLNVQNAAWILLTTRFKQVTLSHISLDHHCSKYTDLLRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGG--G--GG--GGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGG---GGGGGGGGGGG-GGGGGGGGGGGGGGGGGGG--G--GGGGGGGGGGGGGGGG-GGGGGGG------GGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGG-GGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------------GGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGG-GG---G--GGGGGGGGGGGGGG-GGGGGGGGGGGGGG--GGGGG-GG--GG--GGGGGGGGGGGGGG----------GGG--G--GGGGG-GG--GG--G--GGGGGGGGGGGGGGGGGG--GG- | |||||||||||||
5 | 6tc0C | 0.08 | 0.08 | 1.00 | 0.82 | CEthreader | HDLISKDYSLGPFVEELFEVTSCYFPIDFTPPPNDPYGIQREDLILSLRAVLASTPRFAEFLLPLDSEILSAKLDSLQTLNACCAVYGQKELKDFLPSLWASIRREVFQTASERVEAEGLAALHSLTACLSCSVLRADAEDLLGSFLSNILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACEHSNVLPLLLEQFHKHSQSNQRRTILEMILGFLKLQQKWSYEDRDERPLSSFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPGLLSAEDTFLEEDSQSCRVAALEASGTLATLYPGAFSRHLLPKLAEELHKCSRHFRCLQALSAVSTHPSIVKETLPLLLQHLCQANKGNMVTESSEVVAVCQSLQQVAEKCQQDPESYWYFHKTALAVQASMPLLEDEVLAALASVIGTATTHLSPELAAQSVTCIVPLFLDGNTSFLPEPFQPFQDGSSGQRRLVALLTAFVCSLPRNVEIPQLNRLMRELLKQSCGHSCPFSSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTVEAGLASESSRDQAFTLLLWVTKALVLRYHPLSACLTTRLMGLLSDPELGCAAADGFSLLMSDCTDVLTRAGHADVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLNRKPVLLPELPTLLSLLLEASCPDSVVQLSTLSCLQPLLLEA | |||||||||||||
6 | 4knhA | 0.07 | 0.07 | 0.95 | 0.87 | EigenThreader | MTDLRKLEALQALHAELVAVRQHRFEGLQVLETLLEEQTDAFKALIAKPARDTKDREALGKEPKN------EDFVNDCLKLADELDLNEKESARILIDCDAEGDVETQSRPLWECGVIRFHQERKYLLDCMRLILEIAADEDIDAGLQESFGVAAEDKISMLQCMADKANARNMLQQASLVRPLDNQETLDFSRLSLVEQHECLASILHAAVQRAAYITEFGSPE----GMGDLQQARRLNDFICKGGDEDSWAGAAVRAWWIAEHNGFYLDDTVQDLRGINLDEEDEQRTKQFLDALKE-----GAFDFILSVAADCKAQEWQDPSQLGARQWLQRKIPSLPSEPFPFSTISNLPDVLRKLRTEEDEQRQLRLIIISYAYEGRPDAAMSFWEDPDSSRRASTPLVSAFCEMLRCLADNEECATAAHNFLL-------------DEGHQASGKMKRSQSLTWSQIFKELEYFTTKVCSEIEPESALMLECYLRLIAKLATESEIARKRLIMLVDTILKLSVGRLRACIFYVLKALMIRKTHEELDAMWRWVEAWMTNPFPGPQECMEMMFREFGIQLLTTLLVPPEGLNSLNDSV------PFPEDPSQLRILRLSCLDFVMVCLVTFVMEWLFNEKVITSLINTIHSLGSASPDSSILRAIQVMIKALELQETYLHLVRPEVLRYQGEAGV | |||||||||||||
7 | 3uekA2 | 0.16 | 0.04 | 0.26 | 1.44 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTPIEEMRKMPRCGEDFPE-------------------WERCDKPLT--RLHVTYE-GTIEGNRGM-----LALHFR---------------------------------------RYLDQF------VPEK------VRRELNKAYC-------GFLRPGVPPENLSAVATGNWGCGAFGGDARLKALIQLLAAAAAERDVVYFTFGDSELMRDIYSMHTFLTERKLNVGKVYRLLLRYYREECRDCSS-PGPDTKLYPFIYHAA | |||||||||||||
8 | 6wucI | 0.10 | 0.06 | 0.64 | 0.58 | MRFsearch | TPPQALKTTLSLLYEKSKQYGL----------------------------------------------SSPQLQALVRLLCETS------------------------------IIDTVTKVYIVYLTKELLLEIINHLGTPTTPPVLQSALCKWLVHNISSSIWLHLWQWITPLVIWQATTPVDVKPWKLSIIKRCAMHPGYRDAPGSATLILQRFQCLVGAS----------SQITESIITINCNRKTLKSDAHFLSILKRILSRAHPA----------NFPADTVQNTIDMYLSEIHQLGA-------------------------------DQSLPEYVPSDSTVSLWDVTSSRDSLKHLYSSIILIWCIWQLKRCFIETPQEVIPI-----------------------------IISVSSMDNKLSSRIIQTFCNLKYLK-----------------------------------------LDELTLKKVCGGILPLWKPELISGTREFFVKFMASIFMWS------------------------------TRDGHDNNCTFSETCFYVLQMITNWV----------------------LTLLHDMQSLLTLDKIFNNATSNRFSTMAFISSLDILTQLSKQTKSDPLLLSAACRYLVATKNKLMQYPS--TNKFVRMQNQYIMDL | |||||||||||||
9 | 5o9zG | 0.10 | 0.09 | 0.91 | 1.05 | FFAS-3D | -DERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGYLTDLNSMIPTHGGDINDIKKARLLLKSVREHPPAWIASARLEEVTGKLQVARNLIMKGTEDTAKAVVAQAVRRIYIRAAELETDI---RAKKRVLRKALVELEEEDARIMLSRAVEELWLALA---------RLETYENARKVLNKARENIPTDRHIWITAAKLEEANGN------------TQMVEKIIDRAITEQWIQDAEECDRAGSVATCQAVMRAV--IGIGIEEEDRKHTWMEDADSCVAHNALECAQVFPSKKSVWLEALLQRAVMGAKSKWLAGDVPAARSILALAFQANPNSEE------------IWLAAVKLESENDEYERA-RRLLAKARSSAPTARVFMKSVKLEVQDNIRAAQDLCEEALRHYE-------DFPKLWMMKGQIEEQKEMMEKAREAYNQGLKLWLLLSRLEEKIGQLTRAAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQERRTKSVDALKKCEHDPHVLLAVAKLFWSQRKITKEWFHRTVKWAFFYKF--------ELQHGTEEQQEEVRKRCESAEPRHGELWCAVSKIANWQKKIGDILRLVAGRIKN------ | |||||||||||||
10 | 5wtjA1 | 0.14 | 0.12 | 0.85 | 1.00 | SPARKS-K | SRLHAKEELDLELITFFASTNEKIFSRENINNDENIDFFGGDREKNYVLD---------------KKILNSKIKIIRDLDFDNKNNIT---------------------NNFIRKFTKIGTNERNRILYNKVINIIQNLKIEVSKALNLDVVFKKKNI--------------ITKINDIIKYLPSFSKVLPEILNLYRNNPKNEVLNALIYVNKELYKKLILEDDLEENESKN-----IFLQELKKTLGNIEIDEN----IIENYYKNAQISASKGNNK---AIKKYQKKVIECYIGYLRKNYEE---LFDFSDFKNIQEIKKQIKDINDNKTYERITVKTSDK--------TIVINDDF---EYIISIFALIIDILDEI---QLNTLRNECITENWNLNLEEFIQKKEIEKDFDDFKIQT--KKEIFNNYYEDIKNNILTEFINGCDVLEKIKFEIDKKSNILQDEQSNINKKDLKKKVDQKDKDQEIK--SKILCRII---FNSDFLKKYKKEIDNLIEIYYIYKKNLFLNIGNPNFDKKADAKFLFNIDGKNIRKNK-ISEIDAILKNLNKEKYIKKLKENDDFFAKNIQNK----NYKSNRVSEYKKIRDLVNWKLAIQINKP------ENESIRNYISHFY--IVRNDYSIAEQIDRVSNLLSY---STRYNNSTYASVFEVFKVNL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |