>PF05619 (362 residues) MPQDTISVSLLDSRIQASRPNYYNPLLVYKTAKIKVNKDAANFITLNLTVNNYEKQIETL EKDNGNGQDQFGKEKTLLKTAMSNFFNSSEESLKSAVLFIYKDKPEELKKYLKVHRHTFV VLINTEGDNSDDGLKIYKDDYDKFKTPSIFFVFSTKEQEIKELFKDKGNTEKERNIAVYS NNKDNLHLKFISQYLHQASIFHAVNPYGMPLAATPLVDDTVIGKLRTAKINFYSLLNETG LDGMPAFKEGVDLAGSSIDELFTYHYIKNEAIIELIRIWNKNNRQNSKLSALQLSGARDN AYTSAIECLLKRFVDRGLIIEYKNLNLTLSPTPQLKLELSVNITYNFSINAVALVITTQD IV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MPQDTISVSLLDSRIQASRPNYYNPLLVYKTAKIKVNKDAANFITLNLTVNNYEKQIETLEKDNGNGQDQFGKEKTLLKTAMSNFFNSSEESLKSAVLFIYKDKPEELKKYLKVHRHTFVVLINTEGDNSDDGLKIYKDDYDKFKTPSIFFVFSTKEQEIKELFKDKGNTEKERNIAVYSNNKDNLHLKFISQYLHQASIFHAVNPYGMPLAATPLVDDTVIGKLRTAKINFYSLLNETGLDGMPAFKEGVDLAGSSIDELFTYHYIKNEAIIELIRIWNKNNRQNSKLSALQLSGARDNAYTSAIECLLKRFVDRGLIIEYKNLNLTLSPTPQLKLELSVNITYNFSINAVALVITTQDIV | |||||||||||||||||||
1 | 4wcjA | 0.07 | 0.04 | 0.53 | 0.64 | DisCoVER | LQGDGLVVLCYHYAIYLRQVGVRFVTP----------------QEAEDYLAGRIHL-----------------------------P-----GKLVLVTFDDG-DLSVYRHAFPVLIPFLFFVIAQVGRKWEFSMCSWEQIKEMVSGLCVVGLHTYD--LHYWDSQAKKPVFFADTAGTCLKEHLGLKT-RY---F--AYPYGFGTPTTDEILRTQGF--------------SL-VFT-LRAKVNRP------G------------------------------------------------------------------------------------D-APFVGRVL-VTSQV-AAWAQ--- | |||||||||||||
2 | 2j5wA | 0.08 | 0.06 | 0.69 | 0.67 | DEthreader | ------------------------------------GEKKLIS-------HGVTRIGPLIICKEHIDRE-FV--VM-FS-V-VDENFSEQQRNEVDVHAAFFHGQWMLSCQHLKAGLQ--EPIGVRFNKNNEEWTVV--MYYSAVDPTKIFIGPMKICK--SL--NGRQDKEFYLFPTFDESLQNKMHSMNGFMYG-------VVWYLF-IYFSGNTY--LWRGER---RDTANLFP---------T----------SLTL---HMWPDT--FNV--L------YIAAYRQGPQLHADVKIIFIHAYYSTVDQVKD-LYSGLIGPLIVC--RRP---NWYLMGMG-N-EIDFPGTYQTLE-- | |||||||||||||
3 | 2oo0A | 0.10 | 0.10 | 0.98 | 0.54 | CEthreader | DEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVTLRTSRLLLERAKELNIDVVGVSAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLE----QTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQN---- | |||||||||||||
4 | 2wmfA | 0.09 | 0.08 | 0.89 | 0.72 | EigenThreader | NNESPLLLSPLYGNDNGNGLWWGNTPYAAIEL-HPAKVCKPTSCIP------------------RDTKELREWYVKMLEEAQSLN-------IPVFLVIMSAVPPEWLDEQFQKYSVLKGVLNIENWIYNNQLAPHSAKYLEVCAKYGAHFIWHDHEETIMNDFFEASQKYHKNLVLATKNTPSSTDT------WKWWEKHYTNTFETGRARDEPESMIAMEMMNVYTGAAYTFMTN----DVPTPAFTKG-----IIPFFRHAIQNPAPSKEEVVNRTKLYNNGRYHILPVIHEKIDKEKISSIFSKVNYLNSLYNSWYIYNQVMLPMYTNNTKSLSLDLTAVVKEPNNLHILLNNYRTDK | |||||||||||||
5 | 3hxlA | 0.10 | 0.07 | 0.75 | 0.33 | HHpred | ---NDITLVIQENIDDETK---F-DVSTLVDGAEDIAGL-AANDWVIFSGTG------ALPLIGSDGAVT-N---QAYIDYLAAVEI------FDFNTIALPSTDATFTAFAKRLGKKIQVVLENYP---------------------------------------AAD--YEGVISVKNGVGTILTAAQATA--WVAGATAGARLTYQGYDEAPRYTNAQIIAALQAGEFLFTAS---D-NQA-LVEQDINTTSFDKGKQFVLDGINNDFVRIFSKFY-----SNNA--DGR------NLLKSECINY-NTLQDIDAIKNFDGTDLTVQS-DVDAVYIEAYAWPVDSIEKIYVRVRIKL-- | |||||||||||||
6 | 6ct6A | 0.10 | 0.07 | 0.67 | 0.43 | MRFsearch | -----------------------------------------RPKIALVGSGMIGGTMAFLCSL---------------------------KELGDVVLFDVVNMPMGKAMDLCHNSADVVIITA--------IMREVGGAIKKYCPNAFIINITNPLDVMVAAVQEAANVPKHMICGMA-------GMLDSSRLRRMIADCLHVSPHDVQGMVIGVHGDNMLPLMRYITIPIQEFINKGL---------------INKEDINNIYNKTKQAGGDIVRLLGQG--------------SAYYAPGTSAILMAESYLKDKRLFVSSCYLNGQ--YNVNNHYLGVPCIIG--GKGIEQIIEL---- | |||||||||||||
7 | 3lmlA | 0.10 | 0.09 | 0.90 | 0.58 | FFAS-3D | -PG--IYTNFKAAAERTKAGERGTVALPLAASWGAAKE--------FVEINKEEDVEKKL------GLSLAHQSFLLLRETLKLAKIKATATLATDVVVTAKYGGIVGNSASELIDSNYVSFKTVGGTDQPVTNLDYTQFLVSAEGEYFDTIAFPVKTSFVSFVKRRDEQGVKIKGVVTLRDGTILEPHQVVAWV--AGADASASLKSNTFVKTPRLANDEAEEALQNGE---FVLTFDARDKAVYVEQDLNSLTTFNKISRILDGINNDTRRNILDAI---------KERKDANTDIPAQFILSQTAYLNELQDSGAITNFDDITVSLNNNVD-GFIVNQSIEPVDSGEKFYFTTEVK--- | |||||||||||||
8 | 5kcaA | 0.09 | 0.08 | 0.93 | 0.51 | SPARKS-K | EKGDRAYLKLERGNL--MGGWKY-STFSGFLVFPL---SDSIIHIGAIFDESFRTAVGDLNQNEEILQNNPFQAVQEACELMNQG-------ILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTASNRNDDHDVILRVVTEYAWQK-FIIFYDSENNINKMITTLTMRIEERAILVMN-------PATAKSFITEVVETNLVAFDCHWIIINEEINDVDVQELVRRRLTIIRQTFPVPQNRCFRISSTLCDPKDPAQNMEISNLYIYDTVLLLANAFHKKDRKWHSMASLSCIRKNSKPWQGG-RSMLETIKKG----GVSGLTGELEFGENGGVHFEILGTNYGGVRKLGCWNPVTGLN | |||||||||||||
9 | 7odcA | 0.11 | 0.07 | 0.66 | 0.71 | CNFpred | --------------------------------------------FYVADLGDILKKHLRWLKA-----------------------------LPRVTPFYAVKDSRAIVSTLAAI--GTGFDCASKT-----EIQLVQGL-----PAERVIYANKQVSQIKYAASN-----GVQMMTFDSE----IELMKVARAHPKAKLVLRI-KFGATLKT----SRLLLERAKELNIDVIGVSFHVG-------------SGCTDPDTFVQAVSDARCVFDMATEVG------FSMHLLDIGGGFFEEITSVINPALDKYFPSGVRIIAEPGRYYVAS--AFTLAVNIIAKKTV-EQTFMYYVNDG--- | |||||||||||||
10 | 2i6qA | 0.06 | 0.04 | 0.67 | 0.83 | DEthreader | --------------------RSGHLNLYLLLDCITFAS--EPKVLMSSRMTEVISSLENANYKDHEN---------------------------------NTYALNSVYLMMNQMWIRHAIILLTDG--KSNMGGSPKTAVDHIRIRYLDIYAIGVDWRELNELG-SKKD-GE-RHAFILQDTKALQVFEHM-LDV-SKL-TDTI---------------------------V--------------GN--MS-ANAS-DQERTPWHVGALIVLTAAHFAVISPGF-DV-FAKKNGILEFY-GDDIAL---CLPCTAALPAHNILAVEKTMF----CKGESAVFLERRFRFFVGVWGLYNPL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |