>PF05616 (507 residues) YAERFKYPIGNSDVRLDIDHKKSVVTDFRVDGQRFSGRIIEPSIIEHVPTGARSLEKVPV KFTASVSRAAVLSGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQAQGYQYDPE TDKFVKGYEYSNCLWYEDKRRINRTYGCYGVDSSIMRLMSDDSRFPEVKELMESQMYRLA RPFWNWHKEELNKLSSLDWNNFVLNRCTFNWNGGDCLVNKGDDFRNGADFSLIRNSKYKE EMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVA TFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNP EPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGKDGKDGGLLCKFFPDILACDR LPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTI AERLRYMLLALAWAVAAFFCIRTVSRE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YAERFKYPIGNSDVRLDIDHKKSVVTDFRVDGQRFSGRIIEPSIIEHVPTGARSLEKVPVKFTASVSRAAVLSGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQAQGYQYDPETDKFVKGYEYSNCLWYEDKRRINRTYGCYGVDSSIMRLMSDDSRFPEVKELMESQMYRLARPFWNWHKEELNKLSSLDWNNFVLNRCTFNWNGGDCLVNKGDDFRNGADFSLIRNSKYKEEMDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTSPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGKDGKDGGLLCKFFPDILACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWAVAAFFCIRTVSRE | |||||||||||||||||||
1 | 5szsA | 0.07 | 0.07 | 0.89 | 0.64 | DisCoVER | IDVGNHRSA--FALHTYDANQYYIYVTNEIGNASVTLKICKFSCIVISGETVFYVPGFPFFLVDGVSRLYQP-LRLTCLWPVPGLSTGFVYFNGSDVNCNGVVDVMR-YN--L-NFSANSL---DNLKSGVIVFKTLQ----YDVLFYCSNDT-TIP-FG-PS-----S--QP--YY--C---F--IN--STINTTHVSTFVGI--LPPTVRIVARTGQFFKYFDLGFIEAVNFNVTTASAT----D--FW-TVA---F--ATFVDVLVNVSATNIQNLLFGLQDYSAYQHTDINFTATASFGGSCYVCKPHQVNISLNTSVCVRTSHFSIRTICFSTVEVCNFPLYVTSITGVP-YPVS---GIREF-SNLVLNNCTKYNIYDYVGTGIIRSNLLGFFIVTPCNDQVAVNLSIPSNWTTSVQVEYLQIFSLANVLPQRNISRIAGRSGIGILNGTHIFSIVNSAPDGLLFLHTVLLPTDYKNVKAWVFRVTSRVMF-QPRLPVLS- | |||||||||||||
2 | 3ir7A | 0.03 | 0.02 | 0.63 | 0.67 | DEthreader | NRLKYPMMRVWIAFKQ-R-------NELIA--NVTIPDRVA--FSPIPAM-----------ARYLSL---TCLSF---Y--------------DWYCDLPPA-----GEQTDVP------------ESADW--------------AWGSNVPQTRTPDA---------YAEIAKLCDL-WLAPKQGTDGTEHFNKVQITGRQIIAEFNA--RSMIIVG------MNYRGLIWAHYQKLR----IWRSNLLGSSGKGHEMSTCLTDWEYKA-TDIVTL---PIQHD-----------SAAELAQDVKDWKAPHIMVGLMNMILT--PETNGAVKAWAAL------S-EF------RDHTHLANKE-----QPRKIISSGLVSNAGYTNVHELIPWRTLSG---------R---------QQLYQDHQWMRFGESLLVYRPPITFLTPH------------THMI--GGYAHLA---------------------GFNYYGTVG----- | |||||||||||||
3 | 1vt4I3 | 0.08 | 0.07 | 0.82 | 1.05 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------------------------------------------------------------------- | |||||||||||||
4 | 5wlcLO | 0.05 | 0.04 | 0.73 | 0.72 | EigenThreader | SEDGKITSGFCLATFEEHTSSVTAVQFAKR-GQVMFSSSLDGTVRAWDLIRYRNFRIQFNCLAVDLSG--------------------HEGP---------------------VSCLSFSSVLASASWDKTIRIWSIFG-RSQQVEPIEVYSD------------------------------------------------VLSMRPVSTLKGQISIFNI---EDAKQVGNIDC-RKDIISGRF--------NQDRFTAKN----SERSKFFTTIHYSFDGMAIVAGGN----NNSICLYDVPNEVLLKR----FIVSLNGTLEFLNSKKMTEAGLPGSQRGGDLSTRKMRPEVRVTTILFDPFDLDVDVTPHSTVEALREKQFLNALVMAFRLNEEYLINKVYEAIPIKEIPLVASNIPAIYIESQHIEFNLIWIKALLSASGGYINEHKYLF---------------------STAMRSIQRFIVRVTTTDNKYTYRFLVSTDGS | |||||||||||||
5 | 5f4hA2 | 0.14 | 0.02 | 0.17 | 0.31 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SFFDD--ETMSLHIKEDTVPRGNWKFVNLS--DKPMLSTDVRMIANEIINLIKGSFVEIE----------RRGSLIIQLGNYR--------VVITRPPLSDGWITIT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 1vt4I3 | 0.14 | 0.06 | 0.39 | 0.58 | MRFsearch | ------------------------------------------------------------------------LDQYFYSHIGHHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHD-----------------------------STAWNASGSILNTLQQCDNDPKYERLVNAILDFLPKIEENLICSKYTDL---------------------------------LRIALM-------AEDEAIFEEAHKQVQ------------------------------------------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6mb3E | 0.24 | 0.04 | 0.17 | 0.57 | FFAS-3D | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ANPNVDPNANPNPNANPNVDPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNAN---------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 3j3iA | 0.09 | 0.08 | 0.91 | 0.62 | SPARKS-K | MAERKEVDFHVGNHIHVTYAIAPVCDSYDLPGRCYVFNSKPTSHVSVPADAIVSQGRQIQPSAVTLNPGLVYSSILTYAMDTS-----CTDLLQEAQIIACSLQ---------ENRYFSRIG-LPTVVSLYDLMVPAFIAQ-NSALEGARLSGDL---------SKAVGRVHQMLGMVAAKDIISATHDPSHGIRQYLNSN-SRLVTQMASKL------TGIGLPQMRIFS------EMDTADYADMLHLTGLWLVQDASVCTDNGPISFLVNGEKSADRAGYDVANIRIEHHKMPTGAFTTRW-VAAKRDSALRLTPRSDMVRECDFNPTMNLKAAGPKARLRGSGVKSRRRVSRSPPRRESRRVPIIDEPPAYESGRSSSPVTGTSQHEEEMGLFDAERLGRGTLEIQEAALEGQVAQGETAEKNRRIEAPQFTGREQIT--KMLSDGGLGVREREEWLELVDKTVGVKGTLLSGNSKHVRRINQLIRES---NPSAFETEASRM | |||||||||||||
9 | 1ce8A | 0.13 | 0.07 | 0.51 | 0.63 | CNFpred | --------------------------------------------------------------------WEVVRKIIEKERPDAVLPT----MGGQTALNCALELERQGVLEEF-------------------------------GVTMIGATADAIDKAED---RRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAY-----------------------NREEFEEICARGLDLSPT-------------------KELLIDESLI----GWKEYEMEVVRDK-NDNCIIVCSIENFDA--------------------------------------------------------------------------------------GIHTGDSITVAPAQTLTDKEYQIMRNAS--------AVLREIGVETGGSNVQFAVNPKGRLIVIEMNPRSRSSALASKATGFPIAKVAAKLAVGYTLDE | |||||||||||||
10 | 5h64A | 0.08 | 0.04 | 0.57 | 0.67 | DEthreader | -----S-L-RV-GV-RKYPTLLEVLNFLKTEQNQGT------------KHKV-I---------------------------GN-PLD---EFYPAVSMVALMRIFRDLTIFKSLGLCVQF---VVSFVKSIR-----------LLIEQIVALGGEF-K---------LYLPQLIPHMLRVFMHDNSPGRIV-------K----A-QLFGANLDYLLLPPIVKLFDAPKAETDR---------DSSSPSLRSCWALAQAYNPMARD--------------------SIELALTSQDIAEVT--------------QTLLNLEFMHSDGPPDNIVLLERAA-----A--YKELEFQKGPTPAILES-LISINNKLQQ-PEAAAG-VLEYAMKHF------------------------------------------------------------QTLKETSFARISKQLPQLLELQYVSPKLLM-CRDLELA----I------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |