>PF05508 (334 residues) MDFFLAKVSQQAVSFAIRSGIIVTSQFAIKECSRYISSIKGKDRQELQDLQDRLEQKIRI ISPAIDLVEIISARGNTSLESALTLTKNIRHDIQSLGVRVAGLSAQGGGRKRRRSQDEIN AVVQDIKQLLRKIEDAVPFINLAITTSGVNISSNIPHNVSPSRLMQASTLLTAGDTAYSM NPFNPAQIGTTFTLSLYMLFAGHSHRQEHVSAKDLTWQEVVYKCKVKLQRVPLVYDDDQD EDGASRNTNRLRAQSKIDEYCYELCLIEDLDDGRMHEVEEGKQPPGSFDDVEKAGLRTRI PIHQISKIFYTNSGQLLGIEDSSSPILLVKRDLN |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDFFLAKVSQQAVSFAIRSGIIVTSQFAIKECSRYISSIKGKDRQELQDLQDRLEQKIRIISPAIDLVEIISARGNTSLESALTLTKNIRHDIQSLGVRVAGLSAQGGGRKRRRSQDEINAVVQDIKQLLRKIEDAVPFINLAITTSGVNISSNIPHNVSPSRLMQASTLLTAGDTAYSMNPFNPAQIGTTFTLSLYMLFAGHSHRQEHVSAKDLTWQEVVYKCKVKLQRVPLVYDDDQDEDGASRNTNRLRAQSKIDEYCYELCLIEDLDDGRMHEVEEGKQPPGSFDDVEKAGLRTRIPIHQISKIFYTNSGQLLGIEDSSSPILLVKRDLN | |||||||||||||||||||
1 | 1sj8A1 | 0.02 | 0.01 | 0.40 | 0.75 | DisCoVER | --PLTSAQQALTGTINSSM-----------------------------------------QAVQAA-------------------------------------------------------------------------------------------------Q-AT---LDDFE-TLGQSKAWRKMSKHEIHQVAITGTASVVLTA-TDYTAVGAVTTISSNLMSGVKLLAALLE-------------DEG----GNGRPLLQAA-----------------------------------K--GLAGAVSELLRSAQPANLLAANVGASLL-- | |||||||||||||
2 | 1fftA | 0.08 | 0.05 | 0.68 | 0.83 | DEthreader | ------------DHKRLGIMYIIVAIVMLLRGFADAIMMHYDQFTAHGVIMIFFVAMPFVIGLMNLVVPLIGARDVAFPFLNNLSFWFTVVGV-ILV-NV---------------SLGVGEFAGYWIWSLQLSGIGTTLTGINFFVTIKMRAMTMFKMPVFTWASCILTCITVLSFIVWFFGITMIAIGVKIFNW-----------------VFHSAMLWTIGFIFSGMGVAVPGAD------------FVLHNSLF-L-I-HF----------------------------------HNVIIGGVVGCGWWKA----TDWGGRT--------- | |||||||||||||
3 | 5cwoA | 0.08 | 0.05 | 0.63 | 0.52 | CEthreader | -----------PELEEWIRRAKEVAKEVEKVAQRAEEEGNPDLRDSAKELRRAVEEAIEEAKKQGN----------------PELVEWVARAAKVAAEVIKVAIQAEKEGNRDLFRAALELVRAVIEAIEEAVKQGNPELVEWVARAAKVAAEVIKVAIFRAALELVRAVIEAIEEAVKQGNPELVERVARLAKKAAELIKRAIRAEKEGNRDERREALERVREVIERIEELVRQG-------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 1qrtA | 0.04 | 0.04 | 0.90 | 0.77 | EigenThreader | HIGHAKSICLNFGIAQDYEYVESIKNDVEWL--------GSSDYFDQLHAYAIELINKGLTPEQIREYRGPGKNSPYRDRSVEENLALFEKMRADFTHCISDALEGITEFQ--GNRRLYDWVLDNILLVTDSGLRRRGASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAM------AVDPVKLVIEMVTMPN--------HPNKPEMGSRQVPFS-GEIWIDR-ADFEANKQYKRLVLGKFCTYDADTLGVIHWVSARLYDRLFSVPNPGAADDFLSVINP---ESLVKQGFAEDAGYFCLDSRHS------TAEKPVFNRTVGRD | |||||||||||||
5 | 3ghgJ | 0.11 | 0.05 | 0.46 | 0.36 | HHpred | ------------------------------RMKGLIDEVNQDFTNRINKLKNSLFEQKNNKDLIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQH---------IQLLQKNVRAQLVDMKRLEVD---IDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL-PSRDRQHLPLIKMK------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 5j65A | 0.13 | 0.07 | 0.56 | 0.37 | MRFsearch | --ARCGILIKEAKQYEEAAKNIVTSLEGVINIQKRLKEVQKELLEKVKNLKTTLERTIKALGPLLGFVVYEIL-ENTAVQHIKNQIDEIKKQLDSAQHDLDRDVK---------IIGMLNSINTDIDNLYSQGQEAIKVIGAQIENLRTTSLQEVQDSDDADEIQIEWLVVAQEARDFTLNASNLEYKCPENNFMIYWYN-------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1s35A | 0.09 | 0.04 | 0.52 | 0.77 | FFAS-3D | -EQAFLQDLDDFQAWLSITQKAVEAEQLLQQHAGIKDEI-DGHQDSYQRVKESLGQRLEGLDTGWDALGRMWESRSHTLAQCLGF-QEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEG---NLYSDKIKEKVQLIEDRHRKNNE---------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 1f31A | 0.10 | 0.09 | 0.93 | 0.72 | SPARKS-K | VAQWLSTTQFYTIKEGMYKALNYQAQALEEIIKYRYNIYSEKEKDINSKLNEGINQAIDNINNFINGCSVSYLMKKM----IPLAVEKLLDFDNTLKKNLLNYIDENKIGSAEYEKSKVNKLIEMFNKYNSEILNNI---ILNLRLSGYGAKVEVYDGV---------ELNDKNQFKLTSSANSKIRVFLDFSVSFWIRIPKYKNIQNYIHNEYTIWKISIRGNRIIWTLID-----INGKTKSVFFEYNIREDSEYINRWFFVTITNNLNNGKLESNTDIKDIREVIGDIDQFIWMKYFSISNIEERYKIQSGNPLMY---NKEYYMFNAGNK | |||||||||||||
9 | 5xflA | 0.13 | 0.07 | 0.52 | 0.67 | CNFpred | LNIAIDKMTKKTRDLLRKAVMDHISDSTNVPLLVLIEAAKSGNEKEVKEYAQVFREHANKLVEVANLACSIS-----NNEEGVKLVRMAATQIDSLCPQVINAALTLARPQSKVAQDNMDVFKDQWEKQVRVLTEAVDSVDDFLSVSENHILEDVN-EGDVDTLDRTAGAIRGRAARVIH---------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 7bspA | 0.04 | 0.03 | 0.67 | 0.67 | DEthreader | RIVSSKYTNFLPKNLFEQFRFFLIIFLVQVTV---D-------T-PTS--PVTSGLPLFFVIVTAIKQGYEDRGKKRSVEKSINA-LI--LF--------------KERETLKVLKMFTDFLSFMVLFNFII--PVSMYVTVEMQ-KFLGSFSWDALVNTSDLNEEL-GQ-------------------VDYVFTDKTGN---LCLCHTVEISSSFDAVR---IELHAAG------------QT--------------------HQEYGLIID--GST-LSLILKFLICMKCTAVL------------IGIKG-KEGRQAARNSYSVKFKH--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |