>PF05477 (229 residues) SDLKAFLLNHPFLQLTDGKKIKCTLNGHEFPCSLAELQKFTQGKKYEKLSAAADFSYSQY EPHVVPSTKQPNQLFCKLTLRHLNRQPHHVLRHVNGKRFKKALSKYEECTRQGIEFVPAR LKQKRPKDFGEEASRGRTPKHGRNILEPQHSSSDEDHSDSEDSMSDLYPSTVFTIKNTAE ESMEGDGAVEEDDFQTDEDEGMEVDKQVVQKRKKVQGPGFQKKFRNNQC |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | SDLKAFLLNHPFLQLTDGKKIKCTLNGHEFPCSLAELQKFTQGKKYEKLSAAADFSYSQYEPHVVPSTKQPNQLFCKLTLRHLNRQPHHVLRHVNGKRFKKALSKYEECTRQGIEFVPARLKQKRPKDFGEEASRGRTPKHGRNILEPQHSSSDEDHSDSEDSMSDLYPSTVFTIKNTAEESMEGDGAVEEDDFQTDEDEGMEVDKQVVQKRKKVQGPGFQKKFRNNQC | |||||||||||||||||||
1 | 1vt4I | 0.06 | 0.05 | 0.81 | 0.52 | DisCoVER | -GG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-G----GG-GG-------GGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--G---G--------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGG--------GGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGG- | |||||||||||||
2 | 5d06A | 0.05 | 0.03 | 0.72 | 0.67 | DEthreader | LSLESINYVYRAYGLVGIMYGCC-----RLRAMQLMSDNVGSTVFVQSLA----------T--QMVSAMKSTSAMAADVFISLRG---LTT--GRYEEAKEHILAFKTLDGRNPRYARDAAWFFV---------------AIQDYV-LLQEKVTRF--------------C-TWMDPRDGAALYPYEDYQFRPNFTIAMVVA--TLYHQWWCYLAELDSSP-------- | |||||||||||||
3 | 3etcB | 0.08 | 0.08 | 1.00 | 0.49 | CEthreader | DVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNDNTYPLGHILTAKYWQNVVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTYAVVAGEPLNPEVFNRFLEFTGIKLMEGVTIATFPWMEPKPGSIGKPTPGYKIEGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHV | |||||||||||||
4 | 5dw7A | 0.08 | 0.08 | 0.93 | 0.52 | EigenThreader | DYGLLCAYTHPDCDGPALSLITD---WYVWVFFFDDHFLEKYKRLAGKAHL---DRLPLFMPLPEPRNPVEAGLADLWTRTVPAMSADWRRRFAVATEHLYIEMRRKVGLMETFSDAVHLRNDLFSYQREV-----EDEGELSNGVLVLETFFGCTTQEAADLVNDVLTSRLHQFEHTAFTEVPAVALEK----GLTPLEVAAVGAYTKGLQDWQSGGHEWHMRSSRYM | |||||||||||||
5 | 1zu1A | 0.13 | 0.06 | 0.44 | 0.39 | HHpred | -AVNSLIRENSH----IFSDTQCKVCSAVLI-SESQKLAHYQSRKHANKVRRYMAGEDKFKAAPAISDGEDRSKCCPVCNMTFS-SPVVAESHYIGKTHIKNLRLREQ------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 1zu1A | 0.13 | 0.06 | 0.44 | 0.68 | MRFsearch | --VNSLIRENSHIFS----DTQCKVC-SAVLISESQKLAHYQSRKHANKVRRYMAPAKKFKAPAEISDGEDRSKCCPVCNMTF-SSPVVAESHYIGKTHIKNLRLREQ------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1zu1A | 0.13 | 0.06 | 0.45 | 0.53 | FFAS-3D | DAVNSLIRENSHI----FSDTQCKVCSAVLI-SESQKLAHYQSRKHANKVRDSVPAKKFKAAPAEISDGEDRSKCCPVC-NMTFSSPVVAESHYIGKTHIKNLRLREQ------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6em5m | 0.14 | 0.13 | 0.91 | 0.72 | SPARKS-K | SALDQLLDSIE----LPEGWLLDKNSGSSLNLTKEELELISKIQR----NEQTDDSINPYEPLIDWFTRHEEV-------MPLTAVPEPKRRFVPSKNEAKRVMKIVRAIREGRKKLKEMKEKEKIENYQYDLWGDSTETNDHVMHLRAPKLPPPTNEESYNP-----PEEYLLSPEEKEAWENTEYSERERNFIYSALRKVESIRERFERSLDLYLAPRVRKNKLNID | |||||||||||||
9 | 5m4bA | 0.13 | 0.05 | 0.38 | 0.56 | CNFpred | EGLARLAERHELIGDIRGLACGVELVRNSREPARAETAKL-----IYRAYEL----------GLVLYYVGMNGNVLEMTPPLTM----------TEDEVRHAVNLLDQAFTE--------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 7bvcB | 0.06 | 0.04 | 0.77 | 0.83 | DEthreader | GVLVNDVI-VRNVVVASVNIEITSNLDGYADFVGPQGLS--VSAE--ID------------DGYIL-------QMARTAEYMANRWGSPE--G---NVLALMTKVSD--A---IWIRLPDLICAICLLLREVLRLVAVLAWMPFNNEGATALTYLATAFTLIQ----------YVSNFGAGV-R--Q-PTYSNANIAFAGGCGLADVAFRISPDKLTDDGLGDLR---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |