>PF05473 (200 residues) TAAGNDQAPQLPTKTVLGFTPPLPTLPQPTELVYTKRRRPKRRSRCRCLCFTMGMFAMGV LMTTTLLVSTFVLTVPMVALRTAPCPAQTFGLGDECVRPVSLDAYNSSNSSEIGAVCGAY SEMPAPDNTTVLIMNLLDCLNIGTNESAGEKLNLTDTPLANCNFSQNSVCSRKRVGVCYA ARPLSPLGELIYKARQALRL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TAAGNDQAPQLPTKTVLGFTPPLPTLPQPTELVYTKRRRPKRRSRCRCLCFTMGMFAMGVLMTTTLLVSTFVLTVPMVALRTAPCPAQTFGLGDECVRPVSLDAYNSSNSSEIGAVCGAYSEMPAPDNTTVLIMNLLDCLNIGTNESAGEKLNLTDTPLANCNFSQNSVCSRKRVGVCYAARPLSPLGELIYKARQALRL | |||||||||||||||||||
1 | 5ao5A | 0.13 | 0.10 | 0.75 | 1.80 | HHpred | ---SDNS--PL---KYLNWESDQPDNPSEENCGVIRTE---SSGGWRDCSIAL----------------PYVCKKKP----KVECEPSWQPFQGHCYRLQAE----KRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQGLNDKLQMNFWSDGSLVSDCVTIWDSPCNQSLPSICKKAGQLS--------------- | |||||||||||||
2 | 3zhgA | 0.14 | 0.07 | 0.51 | 1.09 | SPARKS-K | --------------------------------------------------------------------------------LCRLCPWDWTFLLGNCYFFS----KSQRNWNDAVTACKEVKAQLVIINSDEEQTFLQQTSKAKGPKKEATWLWVDGSTLSDCVEFAGDKCELKKFWICKKSATPC--------------- | |||||||||||||
3 | 4qkgA | 0.07 | 0.04 | 0.47 | 0.80 | DisCoVER | --------------------------------------------------------------------------QAA--CPE--S---WIGFRKCFYFSDDTKNWTSS-QRFCDSQD----ADLAQVE---SFQELNFLLR--YKGPSDHWIGLSWIGECAYLNDKGASSAERKWICSKSDIHVG--------------- | |||||||||||||
4 | 1xocA | 0.06 | 0.04 | 0.77 | 0.67 | DEthreader | -------ENMLYSFLTKLIKELGLAYDVKI---VVFTYSEVLFKLKKDNFYNNALDS----------------VIPDAANVPAT------TDLALSYVYITLDRESVVLNKVREDIAVVQTQIVEWSALVEQMNPWS-QYDIFHSS---QIKKG--NYVWYK-AIYIAEDQPYTFLYPNNHMAYHPKRDLYN-------- | |||||||||||||
5 | 3kqgA | 0.07 | 0.05 | 0.67 | 0.49 | CEthreader | ------------------------------------------------SDLEKASALNTKIRALQGSLENMSKLLKRQNDILQVVSQGWKYFKGNFYYFSLIPK----TWYSAEQFCVSRNSHLTSVTSESEQEFLYKTAGLTKAGMEGDWSWVDDTPFEHCGNIKAAPCDKTFLFICKRPYVPSE-------------- | |||||||||||||
6 | 7jptA3 | 0.09 | 0.07 | 0.81 | 0.75 | EigenThreader | --IPKGRT--------------PKTPDWYNPDRAGIHGPPLIIEGYEEAVLYCAVGLKAIKNKIANISGTWLIDLGKPSAAKVQCSEQWIPFQNKCFLKIKPV------SSQASDTCHSYGGTLPSVLSQIEQDFITSLLPDMEIGLEKINKWTDNRELHCALILNLQKSPFTGHFVQKYSEVKS--------------- | |||||||||||||
7 | 3fd4B | 0.15 | 0.09 | 0.57 | 1.57 | HHpred | ------------------------------------------------------------------TLHTFQVPQNYTKANCTYCNTRTFSYKGCCFYFTKK----KHTWNGCFQACAELYPCTYFYGPTPDLPVVTRNLNAGVYRVGEGNWSLDGGTFKHCTYVSHHECSFLKPCLCVSQRSN---------------- | |||||||||||||
8 | 1sl6A | 0.11 | 0.07 | 0.66 | 0.38 | MRFsearch | ------------------------------------------------KSKLQEIYQELTQLKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSN----SQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSMGLSDQEGTWQWVDGSPLEDCAEFNDNRCDVDNYWICKKPAA----------------- | |||||||||||||
9 | 1yxkB | 0.17 | 0.09 | 0.52 | 0.75 | FFAS-3D | -----------------------------------------------------------------------------VANCSAPCPQDWIWHGENCYL----FSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISPSYPWLWEDGSPLMPHLFRVRGAVSQTYCILAAFSICQKKANL---------------- | |||||||||||||
10 | 3vppA | 0.12 | 0.06 | 0.48 | 1.05 | SPARKS-K | ----------------------------------------------------------------------------------SPCPNNWIQNRESCYYVS----EIWSIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSYSGRWLWQDGSSPSVCGYVKSNNCDTWKYFICEKYAL----------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |