>PF05461 (296 residues) LSREDLRLLLTEAQAWAAFVAEAHLSREEAEALCARLSELRTSKAPGDDRHQQEQECRAL FASTFPQLKDQLEPLTKLIGQLRGLAGRADKVHRYCAITNVVARCTSGVSGAMTIAGLIL ASFTAGVSVALTGTGLGLGFLSAGIFVITSVVEHEIMSSIEAEANRLESGGSSIKKKLEE DQALPRRSSGEPDIDVFRGCRVICALRVGNNSLGVTDKAIGRIGMLAQIFLGIKSKVMGI GALALGVIFTVGFLVLDMYNIKQDSEELVQGAKSESGEKLRQKAQYLHKVLEELKP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LSREDLRLLLTEAQAWAAFVAEAHLSREEAEALCARLSELRTSKAPGDDRHQQEQECRALFASTFPQLKDQLEPLTKLIGQLRGLAGRADKVHRYCAITNVVARCTSGVSGAMTIAGLILASFTAGVSVALTGTGLGLGFLSAGIFVITSVVEHEIMSSIEAEANRLESGGSSIKKKLEEDQALPRRSSGEPDIDVFRGCRVICALRVGNNSLGVTDKAIGRIGMLAQIFLGIKSKVMGIGALALGVIFTVGFLVLDMYNIKQDSEELVQGAKSESGEKLRQKAQYLHKVLEELKP | |||||||||||||||||||
1 | 6w08A | 0.08 | 0.06 | 0.79 | 0.71 | DisCoVER | --------SASE--QLQTDIPASIS--------------AMVLLNSACQGVV-ET--YIDQGNAEHWYAQVEQNLNAVQKLVRQW--NLY-FSNDIMDSVLSIANTFKDSNVQILTLFKALETRFDTQLQQLTSLI-LT--LQNPIQSLTSNIKRYDEGLNAWARQVEDAHNTLQQTIAQIIFGVVLILAGFGVSS-QDQQQIASLNALLLSVQVNNDCVVSNLTKA--------Q-DSQ-AVILEQVWYQSAYNEWQDILEVASTLN--NAQPQITKAQI--------------- | |||||||||||||
2 | 2yevA | 0.05 | 0.03 | 0.65 | 0.83 | DEthreader | ---PGGDPVLFQQHMFTVGE-STLFQIAFAFFT-S-----------TLFF---WF-VSE-GL--------AI-LIAGYLYLRLSGAATPPEER-PALWLALLNTFLLVSSSFTVHFAHHDLRRGRNPFRFGLLVTIILGVLFFLVQSWEFYQFYHSSWQAAFFTIVGLH-----------------------------------------LHVVIGGFGLILAYL-QAL-R-GKITLHNHGTLEAASMYWHLVDAVWLVIVTIFY-VW---------------------------- | |||||||||||||
3 | 6gy6A | 0.05 | 0.05 | 0.98 | 0.62 | CEthreader | -----GIFTKGDLINIKLYVKHSLELPFTLEGVKEYIGYNDIDIDGLKPAKMATLFKEIHDHALSSKVQQQSIDLENAGKQITLTGDEIISVIDQSMKKDIKRQQENTQKVKTAVSDFKLKLIGQPQISSKKKLMDDNNLSTTIKDLQSKIDEKNKEIDQFQKDYNKYVGLAFSGMVGGIISWAITGGIFGDKAEKARKQKNKLIDEVKDLQSQVKDKSALQTSVQNLSLSFAGIHTSMVDAEEALNHLDFMWNTMLTQITTSRDKFDDINDALIAFKQVIEPWRDVQGSAAQLIQ | |||||||||||||
4 | 5owvC2 | 0.08 | 0.08 | 0.94 | 0.87 | EigenThreader | IKAYENTYSSFKGRIQELCKELNEASYALENELKELVFSL--------DKDTTVLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILNHQILEQLKSISENSDEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFT---------NYENATKLSLAFFSRKINESRVKSEIYERVLNELNVYEFETLLIILTKIAKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNV | |||||||||||||
5 | 6grjG | 0.15 | 0.11 | 0.74 | 0.32 | HHpred | --------------------LPPGSTKAQWLRQLSVIKEQATLSSLVVNLNNNLITDSSNFQGIVVNLNSKVQ---GDNGVLAQLNGDIDKVNAAGAIAGIVAGGLLVIGGAFTAIGAVADFVT--TSTPVVIGGVA---VAGAGGITAGAIVLHNSLGARQD---LYQKRSSLNSEVLIAQIGNGYKGLAQNVTAATQ---SNAWDSLTSDLGSLITDKGITSGDIRQLWL-------------TAADTTVKTVLTDVTTIKAQI------------------------------ | |||||||||||||
6 | 6ezvX | 0.12 | 0.10 | 0.80 | 0.57 | MRFsearch | ---DAIHELYKASQIMTALSSQVSGIEATVKGMNKELSDWGVK----------MQAAHDDLVNGATNIQKTIIDLQTDIESMNNAIDNNRAAIEKLNKDLVYAQVAVGVGIFMLVAGVALTVATAGTAAAVSGGIAAVGAAGVTWGVLQNQIDDDY--DSIAQEQKQKAEDQQQIIALQG-----------------------------------LSNASSAVVSAIETST----------SVLSDFETTWTVFGNELDDVVTKLNNGASMSIIMEKVMSDAAKNEWDDAVELAKQ | |||||||||||||
7 | 4akkA | 0.12 | 0.11 | 0.95 | 1.01 | FFAS-3D | ---EVVDWFARARQQLHQLAQQGTL-AGQISALVHMLQCLCSGGRLYAAECRAGAALVDEQLTRFSALCWRIACAVWYLPQLAALRKRVRD--REIAAEEATGQFSRIIRHLLALYSFMQGKELAGQERALGALGFALVDRIDGQQPCFDSFQALAQPPQTALFAEQCQASLEIEQLRRVACTRQPPADEGETALR--------WFCAQTQRLEQLRGVEELLIVDLLNAADALVRQQAHELQQLSGQLASLKDALEERKLIEKAKSVYQGMQEEQAQALRKMAMDKNQRMVEIAR | |||||||||||||
8 | 5k7vA | 0.14 | 0.11 | 0.85 | 0.88 | SPARKS-K | ----------IEEVVAEMIDILAESSKKSIEELARAAD--------NKTTEKAVAEAIEEIARLATAAIQLIEALARAISAIAELAKKAIEAIYRLADNHT--TDTFMARAIAAIANLAVTAILAIAALAEEFMARAISAIAELAKKAIEAIYRLADNKFMAAAIEAIALLTLAILAIALLAS---------NHTTE----------------EFMAKAISAIAELAKKAIEAIYRLADNHTSPTYIEKAIEAIEKIARKAIKAIEMLAKNITTEYKEKAKSAIDEIREKAKEAIK | |||||||||||||
9 | 4iggA | 0.10 | 0.09 | 0.99 | 0.90 | CNFpred | RFRPSLEERLEIISGAALMADSSCTRDDRRERIVAECNAVRQAL--RKERSDALNSAIDKMTKKTRDLRRQLRVMDHVSDSFLETNVPLLVLIEAAEVKEYAQVFREHANKLIEVANLACSISEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVITSIDDFLAVSENHILEDVCVIALQEK--DVDGLDRTAGAIRGRAARVIHVVTSEMDEPGVYTEKVLEATKLLTVMPRFTEQVEAAVEALQPMDENEFIDASRLVYDGIRDIRK | |||||||||||||
10 | 5xbjA | 0.06 | 0.04 | 0.74 | 0.83 | DEthreader | ----------------------------------------------------------------D--EY-SY-YKLKGASTQLEYTKYMASTLQEIAQRFPDLQTGILQDLENYNKAWNDFASNNEATKIALVKASQTLTESVNNTFATLDKIQKKVNDITVILSKLVSA-VA--SK--NEINQLITDPGDGNFHYEVRDLTRNYSKSEGK-LSGLTGDGLF-QINAKVAIGSNGVDSGNDMANKIIQLQYKTMEEYYRKLTGKIASD-GENNNVVNSSNETLYNSVYSEYQSKSG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |