>PF05346 (318 residues) LAPADVCALVRFSLLVASVSLFMLLDTSRIYHYIRAQPFMKLYVVFNMLELFEKMWRSLG RDVIDALMRTTWWGRSYQWRLWVFQYFLVLGYVLVHTFMHLVRVLSLNIAINSSESAMFL IVVTNNFGEIKSTVFKKFCSTTLYSIVAADVVERFQLCCDAFIVSLKLATAASPRATSLA AVCSWLCGVFLLEIAVDWVKFLSLVKFNNIRATAFEQYQRVLLADVLLSRVPQAQAHLLP STSFKVPCRRMYAFSHIPTRRIGFMELPIVTLIVACLPVVSWTSTSTLVCAFFGWVCLFV SKVVLSLMIVAFATKRRK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LAPADVCALVRFSLLVASVSLFMLLDTSRIYHYIRAQPFMKLYVVFNMLELFEKMWRSLGRDVIDALMRTTWWGRSYQWRLWVFQYFLVLGYVLVHTFMHLVRVLSLNIAINSSESAMFLIVVTNNFGEIKSTVFKKFCSTTLYSIVAADVVERFQLCCDAFIVSLKLATAASPRATSLAAVCSWLCGVFLLEIAVDWVKFLSLVKFNNIRATAFEQYQRVLLADVLLSRVPQAQAHLLPSTSFKVPCRRMYAFSHIPTRRIGFMELPIVTLIVACLPVVSWTSTSTLVCAFFGWVCLFVSKVVLSLMIVAFATKRRK | |||||||||||||||||||
1 | 5a1sA | 0.08 | 0.06 | 0.74 | 0.70 | DisCoVER | GEIGKRLPIFNKYIGGAPVVLITGAILSVNRKLLLKSLLGYIPTILAGIVGAYVLPIM-GGGNAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAII-------------------------AALLDMVGKKYTWLS--GEGELRETAVGMVLSTTCFLLAYVVAKKILPSGVSI-HYFAWMVVAIKAGAKRLSIV--VG--------------------AVVGAAI------GGWLI--GFYP--IESSITAGLCMANRGGGDLEVLSACQIRLGGGIVLVIASIVFSMMV---------------------- | |||||||||||||
2 | 3fahA | 0.10 | 0.06 | 0.66 | 0.67 | DEthreader | AIWGFCSNACRCTGYQPHMKRS-PWEMN--VK--FAAKKGTLLAMFIGAGY-----------------------------------SA-FRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDTNGQEP---------E--VF-SLPDMIDQLRPKYQAALEKAQESTAT--HKK--GV--GI-SI-GV--YG--SG-LDG-P---DASEAAW-GADIGCVGTAHEALRPRCLKITGNWT------GSLCNQATDGQIYGGLAQGIGLALSE--------ATLVGAGF----------------------- | |||||||||||||
3 | 4yayA | 0.07 | 0.07 | 1.00 | 0.51 | CEthreader | IEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLILNSSDCPKAGRHNYIFVMIPTLYSIIFVVGIFGNSLVVIVIYFYMKLKTVASVFLLNLALADLCFLLTLPLWAVYTAMEYRWPFGNYLCKIASASVSFNLYASVFLLTCLSIDRYLAIVHLVAKVTCIIIWLLAGLASLPAIIHRNVFFIITVCAFHYETLPIGLGLTKNILGFLFPFLIILTSYTLWKALKKNDDIFKIIMAIVLFFFFSWIPHQIFTFLDVLIQL | |||||||||||||
4 | 3n3dA | 0.09 | 0.07 | 0.85 | 0.72 | EigenThreader | VEPQLTALQDYLLRTVPIHHKILALLKSYLFSTAQLQAGAAAIEILHVGTLIHDDVID---------------DSPIQMTYG---------QRNAIYAGDFMFTVYFDQVLKSTTQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLA------GAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPTQKPVLEDLRSGPLLLSLSHAPRDFHKLLKKKQAMTDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSLEQLTRLLLRR------------------ | |||||||||||||
5 | 3jbrA | 0.14 | 0.13 | 0.92 | 0.37 | HHpred | --YFNILDL---LVVAVSLISMESSTILRPLRAINRAKGLKHVVFVAIRTIGNIMFACIGVQLFYRAIDSNEEDMGPVYNNR------VEMAIFFIIYIILIAFFMMN---------IFVGFVIVTFQEQGETEY----PKNPYQYQVWYVVTYFEYLMFALIMLICLGMQHYHQSEEMNHISDIFTIIFTLEMILKLLRGYFGDPWTRISSAFFRLFRVMRLIKLLSRAEGVRTIKSFQALPIGMQMFGKIALVDGTNRNNNFQTFPQAVLLLRCATGEAWQTNFYYFISFYMLCAFLIINLFVAVIMDNFDYLTRD | |||||||||||||
6 | 5a1sA | 0.08 | 0.07 | 0.87 | 0.53 | MRFsearch | --IFNKYIGGAPVMIFLVAAYFVYAEIDAISNVMDKSNFLNLFIAVLITGAIRKLLLKSLLGYIPTIL-----------AGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVT-----GRSREEYYSTAIAILTIANIFAIIFAALLDMVGKKYTWLSITHRETAVGMVLSTTCFLLAYVVAKKILPSIGGSIHYFAWMVLIVAALNASGLCSPEIKAGA-----------------------KRLSDFFSKQLLWVLMVGVGVTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLI | |||||||||||||
7 | 6tgbB | 0.09 | 0.09 | 0.97 | 0.81 | FFAS-3D | -SPAQNAQQLDAKLEALKDLASLSRDVTFAQEFINLDGISLLTMLSFTLTAFVELMDHFSVAFIKKIASFVNKSAIDISILQRSLAILESMVLNSHDLQLIPHLQGSDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRSIILTEMAHQLYVLQVLTFNLLEDRMMMDPQDQAQRDIIFELRRMLALDNMLYFAKHH---------QDAYIRIVLGRSSIELTKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMRALTTQFKSKLQNLSYTEILK- | |||||||||||||
8 | 3w3tA | 0.07 | 0.07 | 0.98 | 0.83 | SPARKS-K | MITSTEWRERFAAMMALSSAAVLIGEIPKILDMVIPLPRVQYGCCNVLGQISTDIQRTAHDRILPALISKL--TSECTSRVQTHAAAALVNFSDILEPYLDSLLTNLLVLLQSLYVQEQALTTIAFIAEAAKNKFIKYYDTLMPLLLNVLKSVLKGKCMECATLIGFAVG-----KEKFHEHSQELISILVALQALRSYLEQSWSRICRILGDDFVPLLPIVIPPLLITAKATQDVGLIEEEEAANDWDVVQVQGKHIAIHTSVLDDKVSAMELLQSYATLLRGQFAVYVKEVMEEIALGVRAAGATLIPILLSCLLA | |||||||||||||
9 | 3rkoB | 0.09 | 0.08 | 0.86 | 1.22 | CNFpred | -----VLDGLSLTMLSVVTGVGFLI-HMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYL-------GWEGVGLCSYLLIGFYGAAAMKAFVVTRVGDVFLAFAL--FILYNELGTLNFREMVELAPAHFADG-------NMLMWATLMLLGGAVGKSAQLPLQTWLADAMAPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGF-------------------AALVQTDIKRVLAYSTMSQIGYMFLALGVQ---AWDAAIFHLMTHAFFKALLFLASGSVILACHHEQN | |||||||||||||
10 | 5yd1A | 0.08 | 0.06 | 0.72 | 0.83 | DEthreader | YVSLTVRRLVMNVAFFFLT-FFFIIPIAFVQSLAT-KSLIQGLLAGIALKLFLIFLPAILMTMSKFEGF-----------------------IFNLVNVFLGSVIAGAAIPMKAT-FFITYIMVDGWAGVAGEILMPLMNPGS-IGFNTGEPQIQLYFLLGLVYAP------------V--TP-MLLPFILVFFALAYVVYRHQII-N-V---Y--NQEYESA-AA-------------------------------FW---DV-GR-ITA-IISQLLLMGGAAPFLIALPVITIGFHRFCKRFEPAFVRY-EAMKDE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |