>PF05279 (268 residues) NGRKGGLSGTSFFTWFMVIALLGVWTSVAVVWFDLVDYEEVLGKLGIYDADGDGDFDVDD AKVLLGLKERSTSEPAVPPEEAEPHTEPEEQVPVEAEPQNIEDEAKEQIQSLLHEMVHAE HVEGEDLQQEDGPTGEPQQEDDEFLMATDVDDRFETLEPEVSHEETEHSYHVEETVSQDC NQDMEEMMSEQENPDSSEPVVEDERLHHDTDDVTYQVYEEQAVYEPLENEGIEITEVTAP PEDNPVEDSQVIVEEVSIFPVEEQQEVP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | NGRKGGLSGTSFFTWFMVIALLGVWTSVAVVWFDLVDYEEVLGKLGIYDADGDGDFDVDDAKVLLGLKERSTSEPAVPPEEAEPHTEPEEQVPVEAEPQNIEDEAKEQIQSLLHEMVHAEHVEGEDLQQEDGPTGEPQQEDDEFLMATDVDDRFETLEPEVSHEETEHSYHVEETVSQDCNQDMEEMMSEQENPDSSEPVVEDERLHHDTDDVTYQVYEEQAVYEPLENEGIEITEVTAPPEDNPVEDSQVIVEEVSIFPVEEQQEVP | |||||||||||||||||||
1 | 2eyzA1 | 0.06 | 0.04 | 0.68 | 0.59 | DisCoVER | WYWG-------RLSRQEAVALLQGQRHGVF-----LVRDSSSPGDYVLSVSENSRVSHY--IINSSGPPPVPPSPAQP--------------------------------PPG--VS-PSRL----R-----IGDQEFDSLPALEFYKIH---YLDT-TTLIE------P-VSRSREA-EY--VR-ALFDFNDEEDLPFKKGDILRDKPEEQWWNAEDSEGKRGMIP----VPYVEK------YRPASASGPQPSVNTPLP---NLQ- | |||||||||||||
2 | 1kqgA | 0.04 | 0.03 | 0.73 | 0.67 | DEthreader | --------A---RGPTVASLATFGMTMVMGG-------------------RS--G-TDITFLSGVLRYLKINAVKHNSLLVRDDFAFSGYDAEKR-----QY-DK-SSWNY--A-----VWNLLKEVSRYTVVTFLCELASARTTTFLYAGW-ITMAMIQLLLGNMGMAGGVNLRIQGLTGLLSTSLYLTLPSQSYLAN---T---PK-ATLADQVNYW-----------------GRWLQWANSCWIYAWPRRVLNAADINPGTPTP | |||||||||||||
3 | 6mltA1 | 0.09 | 0.09 | 1.00 | 0.75 | CEthreader | YINILDHQGNIKKQLLKSASGWRSVGDIALADINGDGNIEILAADGVYSYESGLLFSHDWAPSSIAFDSNGDGQREVFANGTLYQNNGAYLWQYQANDTASLSTPENSEIAVLEHDGSVKWRVNNLSNPGGSVQAVSSFLGKIVYAGYYAVDMYDAQGNKVWSVANDDLNSGKIGVSAYDFTGDGIDEVLVQDRLRMRILDGQTGRVMGIIANSSGTLWEYPVVADLEGNNNASLIMVANDYDRESQVNHGVFVYESANPSKPWRNAT | |||||||||||||
4 | 6t9iD | 0.05 | 0.04 | 0.93 | 0.50 | EigenThreader | DSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVYARRFFDRFINRLFSVNSIDHIKENEVASAFQSHKTMSKTTLNLLLYFLNENESIGGSLIISVINQDLKLEIQKVKESRDA------IKLDNLYTFQ--NTNKDDDCRIAAAGFQDSYIKIWSLDGSSLCKTLVGHSGLLSGSEDKGHNHPVWDVSFSP--LGHYFATTARLWSCHLNDVDCVSFHYVFTGSSDKHTAPVISIAVCPDG--------RWLSTGSEDGHGKNAIYSL | |||||||||||||
5 | 5zeeA | 0.12 | 0.07 | 0.60 | 0.35 | HHpred | -NLLINIGGDHSIGLGTIAGVVKAMARVGVVWFDA--------HPDMNTPEPSGNIHGMPLACAVGLGPQRIMPHYITP---KDIDVGEQFEIQDKHIDHFAEDVKRGMKEVIEAINKKFVDYDVDIDGEFILGTG-TPVPKG-ISLEDSLYFMSEMGKKKLH-----SVDVEYNPKIEEE--------------------------------------------------------------------------------------- | |||||||||||||
6 | 3pm8A | 0.26 | 0.07 | 0.28 | 0.42 | MRFsearch | --NSGTLSSQEILDGLKKIG----PPDIHQVLRDQIHYTDFLAPFKFFDIDGNGKISVEELKRIFGENP----------------------------------LIDKAIDSLLQEV-------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5oc0A | 0.12 | 0.06 | 0.49 | 0.38 | FFAS-3D | --ENKYSRLQISIHWLVFLLVIAAYVSCGISILVLVVRLLLRLKYPTPPIIPKPKYLLFIALPVIGLVYNRGNPWFAFGLTPYASEANFERV-------DSLKSWHETLANLGYFVIHAAAALAHHYFWKDNTLLRPRKR-------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6em5m | 0.07 | 0.07 | 1.00 | 1.35 | SPARKS-K | ETQNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLDSIELLDKNSGSSLNLEELELISKIQRNEQTDDSINPPLIDWFTRHEEVMPLTAVPEPKRRKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLWGDSTETNDHVMHLRAPKLPPPTNEESYNPPEEYLLSPEWENTEYSERERNFIPQKYSALRKVPGYGESIRERFEDLYLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRCSTIYAGHKGKVR | |||||||||||||
9 | 4u8yA | 0.21 | 0.04 | 0.21 | 0.55 | CNFpred | -----------TLTMFGMVLAIGLLVDNAIVVVEN--VERVMAEE---------GLPPKEATRK----------------------------------------SMGQIQGALVGIAM------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 5nvrA | 0.09 | 0.06 | 0.63 | 0.67 | DEthreader | ---------------------------------------VNKLKVIYRWTTGALRN--IKPIISLIETVTRIYLYVLLLSLLRPFTYVNRYDSIHAISNVNKTIFRDGGSQNTLDLKTYAQNVGSTLLPISFREFQ-------------FLDLCLKLS----VSKNENKLNFDILEYCIHPLPAYFAIKQFEIENVLQPLFSGLL-----------------------PELLLKLL-------------PNGLLLKIIIKELL----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |