>PF05274 (190 residues) QSSDSVELNETKQLNVKLNNGRVANLRIAHGDNKLSQVYIAEKPLSIDDIVKEGSNKVGT NSVFLGTVYDYGIKSPNAASTSSNVTMTRGAANFDIKEFKSMFIVFKGVTPTKTVEDNGM LRFEVDNMIVCLIDPNTAPLSEREVRELRKSNCTLVYTRNAAAQQILLENNFTVINAEQT AYLKNYKSYR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QSSDSVELNETKQLNVKLNNGRVANLRIAHGDNKLSQVYIAEKPLSIDDIVKEGSNKVGTNSVFLGTVYDYGIKSPNAASTSSNVTMTRGAANFDIKEFKSMFIVFKGVTPTKTVEDNGMLRFEVDNMIVCLIDPNTAPLSEREVRELRKSNCTLVYTRNAAAQQILLENNFTVINAEQTAYLKNYKSYR | |||||||||||||||||||
1 | 5lvyA | 0.07 | 0.05 | 0.68 | 0.58 | DisCoVER | ----------------------------------NSCSLSIYINFKL--DV-PDPRCKALGGTVYFWGAD---TRDGKLVMKKGQDKYTLMTTYGGAVGGGYGYYHVSQK-------------TPPQTISGVV-----SKNVGYKPGQYTVELTGFFSLNDNKQANPTPSSLTSKAAGKNIVSSTG-TI- | |||||||||||||
2 | 6qj0A | 0.08 | 0.06 | 0.76 | 0.83 | DEthreader | ----RVT-------ELIIDGFKSYTVITG----TGLNKNIDAFVL---GI-TNMS-TV------I-F-NDRSPIGFE-------EYATISVTRIVFQVQ----FLIMQGRIKVLFFQSLILMLLFKPAYILDEVDAALDSHQNIGRLIKRFSQFIVVSLKDGM---FQNANRIFRVFTSVVQALTP---- | |||||||||||||
3 | 1fwxA1 | 0.06 | 0.06 | 0.98 | 0.89 | CEthreader | VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEK---GMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGYTSLFLDSQVVKWNIEDAI | |||||||||||||
4 | 6ftqA | 0.08 | 0.08 | 0.94 | 0.67 | EigenThreader | LPREAFE--------AASREDFELQGYAFEAAPRIVHVGLVQNRIPLIKAIVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGSPILERDSNTAVVISNSLGKTRKNHIHPVFQTQFGRIAVN--IYGRHHPLNWLMYSINAEIIFNPSATEARNAAIANHCFTCA--INRVAAPDSSRT | |||||||||||||
5 | 3rpfA | 0.13 | 0.08 | 0.63 | 0.39 | HHpred | -----------------------------------AVLKIIQGALDTRELLKACAKNFGAFCVFVGIVRKEDN-----------IQGLSFDIYLLKTWFEKWHHKDLGV---VLK-AHSLGDVLIGQSSFLCV-SGKNRLYENFIEDFKHNAPI---------------WKYDLI-HNKRIYAKERS--- | |||||||||||||
6 | 1l9mB | 0.13 | 0.08 | 0.61 | 0.45 | MRFsearch | ----ELILRRGQNFQVLMIMNERLEFIVSTGPGGWSAVLQASN----------------GNTLTISISSPA---------------------SAPIGRYTMALQIFSQG----------GISSVKLGTFILLFNPWLN--------------VDSVFMGNHAERE------EYVQEDAGIIFVGST---- | |||||||||||||
7 | 4rthA | 0.13 | 0.11 | 0.80 | 0.36 | FFAS-3D | -VGDGFKLLPSKWNPSKEREFPGQVLRYEDNFDANSNVSVIIQPTSKKAITEYGSPE-EFLSQVDYLLGKQAYGGKTDETDAVATANVLESSTPVVKQYYSITVLTRTADGDEGGKHQLITATVSDGKLYICKDKRWFKGARKGVEKAAASFSV------------------------------------ | |||||||||||||
8 | 1ddtA2 | 0.13 | 0.10 | 0.75 | 0.49 | SPARKS-K | SPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAE-----------NTPLPIAGVLLPTIP----------------------GKLDVNKSKT-HISVNGMRCRAIDGDVTFCRPVGNGLHVAFHRSSSEKIHSNEI----SSDSIGVLGYQKTV-------DHTKVNSKLSLFFEIKS--- | |||||||||||||
9 | 2iapA | 0.11 | 0.07 | 0.70 | 0.83 | CNFpred | ------CFTTDGQMIQVDTAFFPNGIAVRHMNGRPYQLIVAETP---------------TKKLWSYDIKGPA-----------KIENKKVWGHIPGT-HEGGADGMDF------DEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKP----------------QTKTIFVTEHENNA | |||||||||||||
10 | 2vhhC | 0.08 | 0.07 | 0.89 | 0.83 | DEthreader | --------KVEEDQTL-KAEGFDIKGYRFTARRIVRVGAIQNSIWNKVKTMIKAAAEAGCNIVCTQAWTMP-----------CEFAEGPTTLAEHSILENTAVVISNSGRYLGKHRKNHHPVFETEFGKLAVNICYGRHHPQ-NWMMFGNGAEIVFNPSWIEARNAAIASYFTVPIGSSYVAALDLNLCR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |