>PF05272 (203 residues) YLNTLVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFEIMLCLVGG QGAGKSTFFRLLAVRDEWFSDDLRKLDDDNVYRKLQGHWIIEMSEMMATANAKSIEEIKS FLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRFIPVMVYPEQAEVHI LEDEAASRAYIEQMWAEAMEIYR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | YLNTLVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLAVRDEWFSDDLRKLDDDNVYRKLQGHWIIEMSEMMATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRFIPVMVYPEQAEVHILEDEAASRAYIEQMWAEAMEIYR | |||||||||||||||||||
1 | 6k9cA3 | 0.16 | 0.15 | 0.96 | 1.17 | DEthreader | PLMKVKPVK-EMPEIVKNLLLNFDYDAKSMGLFINWLAFIYQ--YK--ERTGVAWIFMGKQGTGKGLLVDLLKKIEEMSSNITDNLDSQFN-PYLYNKLIVHLNEVSADSRMLVKNRLKTWITDETLYINRKNMK-EVEIKNFCNFIINSNETIPVDI-EDSDRRFNVIECNNVLEQWTTESYQEILNN-AEGFAKYLAGIKV | |||||||||||||
2 | 6k9cA | 0.15 | 0.14 | 0.95 | 1.17 | DEthreader | LMKVKPVKE--MPEIVKNLLLNFDYDAKSMGLFINWLAFIYQY--K--ERTGVAWIFMGKQGTGKGLLVDLLKKFEEMSSNITDALDSQF-NPYLYNKLIVHLNEVSDNSRMLVKNRLKTWITDETLYINRKNMK-EVEIKNFCNFIINSNETIPVDIEDSDRR-FNVIECNNVLKEQWTESYQEILNN-AEGFAKYLAGIKV | |||||||||||||
3 | 6k9cA | 0.16 | 0.15 | 0.93 | 1.34 | HHpred | LMKVKVKEMPEIVKNLLLNLFDYDAKSM--GLFINWLAFIYQY---K-ERTGVAWIFMGKQGTGKGLLVDLLKKIEEHMSSTDANLDS-QFNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRKNMK-EVEIKNFCNFIINSNETIPVD-IEDSDRRFNVIECNNVLKEQEWTTE------SYQEILNNAEGFAK | |||||||||||||
4 | 6k9cA3 | 0.15 | 0.15 | 0.96 | 1.12 | DisCoVER | PLMKVKPVKE-MPEIVKNLLLNLFD--YDAKSMGLFINWLAFIYQYK-ERTGVAWIFMGKQGTGKGLLVDLLKIFEEHMSSNITDNDSQF-NPYLYNKLIVHLNEVSADSRMLVKNRLKTWITDETLYINRKN-MKEVEIKNFCNFIINSNET-IPVDIEDSDRRFNVIECNNVLKEQEWWTSYQEILNNAEGFAKYLAGIV- | |||||||||||||
5 | 6k9cA | 0.16 | 0.14 | 0.90 | 0.80 | MRFsearch | ---------PEIVKNLLLNLFD--YDAKSMGLFINWLAFIYQYK----ERTGVAWIFMGKQGTGKGLLVDLLKKIHMSSNITDANLD-SQFNPYLYNKLIVHLNEVSADSRMLVKNRLKTWITDETLYINRKNM-KEVEIKNFCNFIINSNETIPVDI-EDSDRRFNVIECNNKEQEWWTTESYQEILNNAEGFAKYLAGI-- | |||||||||||||
6 | 6k9cA3 | 0.16 | 0.15 | 0.95 | 1.33 | SPARKS-K | MKVKPVKEMPEIVKNLLLNLFDYD------AKSMGLFINWLAFIYQYKERTGVAWIFMGKQGTGKGLLVDLLKKIEEHM---SSNITDANLNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRK-NMKEVEIKNFCNFIINSNETIPVDIED-SDRRFNVIECVLKEQEWWTTESYQEILNNAEGFAKYLAGIKV | |||||||||||||
7 | 6k9cA | 0.15 | 0.14 | 0.95 | 0.74 | MAPalign | LM-KVKPVK-EMPEIVKNLLNLFDYDAKSMGLFINWLAFIYQYK----ERTGVAWIFMGKQGTGKVDLLKKIF--EEHMSNITDANLDSQFNPYLYNKLIVHLNEVSAKSRMLVKNRLKTWITDETLYIN-RKNMKEVEIKNFCNFIINSNETIPVD-IEDSDRRFNVIECNLKEQEWWTTESYQEILNNAEGFAKYLAGIVD | |||||||||||||
8 | 6k9cA | 0.16 | 0.15 | 0.97 | 0.67 | CEthreader | LMKVKPVKEMPEIVKNLLLNL-FDYDAKSMGLFINWLAFIYQYK----ERTGVAWIFMGKQGTGKGLLVDLLKKEEHMSSNITDANLDSQFNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRKN-MKEVEIKNFCNFIINSNETIPVDIE-DSDRRFNVIECNNVLKEQWTTESYQEILNNAEGFAKYLAGIKV | |||||||||||||
9 | 1tueD | 0.09 | 0.08 | 0.95 | 1.09 | MUSTER | -------NMSQWIRFRCSKIDEGGDWRPIVQFLRYQFITFLGALKS-GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCP--PILLTTNIHPAKDNRWPYESRITVFEFPNAFPDKNGNPVYEINDKNWKCFFERTWSRLD | |||||||||||||
10 | 6k9cA | 0.17 | 0.16 | 0.93 | 1.38 | HHsearch | YINPTPLEMPEIVKNLLLNLFDYD-AK-SMGLFINWLAFIYQY---K-ERTGVAWIFMGKQGTGKGLLVDLLKKIEEHMSITDANLDS-QFNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRKN-MKEVEIKNFCNFIINSNETIPVD-IEDSDRRFNVIECNNVLKEQEWWTT--ES---YQEILNNAEGFAK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |