Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | YLNTLVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLAVRDEWFSDDLRKLDDDNVYRKLQGHWIIEMSEMMATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRFIPVMVYPEQAEVHILEDEAASRAYIEQMWAEAMEIYR |
1 | 6k9cA3 | 0.16 | 0.15 | 0.96 | 1.17 | DEthreader | | PLMKVKPVK-EMPEIVKNLLLNFDYDAKSMGLFINWLAFIYQ--YK--ERTGVAWIFMGKQGTGKGLLVDLLKKIEEMSSNITDNLDSQFN-PYLYNKLIVHLNEVSADSRMLVKNRLKTWITDETLYINRKNMK-EVEIKNFCNFIINSNETIPVDI-EDSDRRFNVIECNNVLEQWTTESYQEILNN-AEGFAKYLAGIKV |
2 | 6k9cA | 0.15 | 0.14 | 0.95 | 1.17 | DEthreader | | LMKVKPVKE--MPEIVKNLLLNFDYDAKSMGLFINWLAFIYQY--K--ERTGVAWIFMGKQGTGKGLLVDLLKKFEEMSSNITDALDSQF-NPYLYNKLIVHLNEVSDNSRMLVKNRLKTWITDETLYINRKNMK-EVEIKNFCNFIINSNETIPVDIEDSDRR-FNVIECNNVLKEQWTESYQEILNN-AEGFAKYLAGIKV |
3 | 6k9cA | 0.16 | 0.15 | 0.93 | 1.34 | HHpred | | LMKVKVKEMPEIVKNLLLNLFDYDAKSM--GLFINWLAFIYQY---K-ERTGVAWIFMGKQGTGKGLLVDLLKKIEEHMSSTDANLDS-QFNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRKNMK-EVEIKNFCNFIINSNETIPVD-IEDSDRRFNVIECNNVLKEQEWTTE------SYQEILNNAEGFAK |
4 | 6k9cA3 | 0.15 | 0.15 | 0.96 | 1.12 | DisCoVER | | PLMKVKPVKE-MPEIVKNLLLNLFD--YDAKSMGLFINWLAFIYQYK-ERTGVAWIFMGKQGTGKGLLVDLLKIFEEHMSSNITDNDSQF-NPYLYNKLIVHLNEVSADSRMLVKNRLKTWITDETLYINRKN-MKEVEIKNFCNFIINSNET-IPVDIEDSDRRFNVIECNNVLKEQEWWTSYQEILNNAEGFAKYLAGIV- |
5 | 6k9cA | 0.16 | 0.14 | 0.90 | 0.80 | MRFsearch | | ---------PEIVKNLLLNLFD--YDAKSMGLFINWLAFIYQYK----ERTGVAWIFMGKQGTGKGLLVDLLKKIHMSSNITDANLD-SQFNPYLYNKLIVHLNEVSADSRMLVKNRLKTWITDETLYINRKNM-KEVEIKNFCNFIINSNETIPVDI-EDSDRRFNVIECNNKEQEWWTTESYQEILNNAEGFAKYLAGI-- |
6 | 6k9cA3 | 0.16 | 0.15 | 0.95 | 1.33 | SPARKS-K | | MKVKPVKEMPEIVKNLLLNLFDYD------AKSMGLFINWLAFIYQYKERTGVAWIFMGKQGTGKGLLVDLLKKIEEHM---SSNITDANLNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRK-NMKEVEIKNFCNFIINSNETIPVDIED-SDRRFNVIECVLKEQEWWTTESYQEILNNAEGFAKYLAGIKV |
7 | 6k9cA | 0.15 | 0.14 | 0.95 | 0.74 | MAPalign | | LM-KVKPVK-EMPEIVKNLLNLFDYDAKSMGLFINWLAFIYQYK----ERTGVAWIFMGKQGTGKVDLLKKIF--EEHMSNITDANLDSQFNPYLYNKLIVHLNEVSAKSRMLVKNRLKTWITDETLYIN-RKNMKEVEIKNFCNFIINSNETIPVD-IEDSDRRFNVIECNLKEQEWWTTESYQEILNNAEGFAKYLAGIVD |
8 | 6k9cA | 0.16 | 0.15 | 0.97 | 0.67 | CEthreader | | LMKVKPVKEMPEIVKNLLLNL-FDYDAKSMGLFINWLAFIYQYK----ERTGVAWIFMGKQGTGKGLLVDLLKKEEHMSSNITDANLDSQFNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRKN-MKEVEIKNFCNFIINSNETIPVDIE-DSDRRFNVIECNNVLKEQWTTESYQEILNNAEGFAKYLAGIKV |
9 | 1tueD | 0.09 | 0.08 | 0.95 | 1.09 | MUSTER | | -------NMSQWIRFRCSKIDEGGDWRPIVQFLRYQFITFLGALKS-GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCP--PILLTTNIHPAKDNRWPYESRITVFEFPNAFPDKNGNPVYEINDKNWKCFFERTWSRLD |
10 | 6k9cA | 0.17 | 0.16 | 0.93 | 1.38 | HHsearch | | YINPTPLEMPEIVKNLLLNLFDYD-AK-SMGLFINWLAFIYQY---K-ERTGVAWIFMGKQGTGKGLLVDLLKKIEEHMSITDANLDS-QFNPYLYNKLIVHLNEVSADNRMLVKNRLKTWITDETLYINRKN-MKEVEIKNFCNFIINSNETIPVD-IEDSDRRFNVIECNNVLKEQEWWTT--ES---YQEILNNAEGFAK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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