>PF05216 (226 residues) IKRFFKPPTLDFETAMWEIFYLIVSPKRVYKSLYYHKQTKNRWARDDPSFVILLSLFLTL SAVAWGIAYSPGVTSILKLILYMVLVDFFLTGVIISTICWVLVNKFFKSKAAHDSIGAVS ENDLEWAYCFDVHCNSFLVIWVALYMVQFILLPLLTMNNWIGLFLGNTLYFVSLSYYFVI TFYGYNALPFLEHTQLILFPIGVLAVFYVISLFGFNVAKTMTNTYF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | IKRFFKPPTLDFETAMWEIFYLIVSPKRVYKSLYYHKQTKNRWARDDPSFVILLSLFLTLSAVAWGIAYSPGVTSILKLILYMVLVDFFLTGVIISTICWVLVNKFFKSKAAHDSIGAVSENDLEWAYCFDVHCNSFLVIWVALYMVQFILLPLLTMNNWIGLFLGNTLYFVSLSYYFVITFYGYNALPFLEHTQLILFPIGVLAVFYVISLFGFNVAKTMTNTYF | |||||||||||||||||||
1 | 5u71A1 | 0.09 | 0.08 | 0.88 | 1.03 | SPARKS-K | GLPLVHTLITVSKILHHKMLHSVLAPMSTLNTLK-AGGILNRFSKDIAILDDPLTIFDFIQLLLIVIGAIAVVAVLIFVATVPVIVAFIMLRAYFLQTSQQLKQLESEGRS------------------------PIFTHLVTSLKG-LWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVIFFIAVTFISILLTLAMNIMSTLQWAVNSSI | |||||||||||||
2 | 3rkoB | 0.10 | 0.08 | 0.83 | 1.18 | CNFpred | -----------LMWATLMLLGGAVGKSAQLPLQTWLAD----AMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ-------------------TDIKRVLAYSTSQIGYMFLALGVQAWDAAIFHLMT----HAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSATAGFFSKDEILAGAM | |||||||||||||
3 | 3rkoM2 | 0.07 | 0.06 | 0.77 | 0.68 | DisCoVER | MWLGV---IGIF-YGAWMA---------------FAQTDIKRLIYTSVSH-MG---FVLIAIYTG-SQL----------AYQGAV-IQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWLPALSLFFAVATLGGNFVGEFMIL-FGSFQV-----------VPVITVISTF-GLVFASVYSLAMLRAYKSQIASQELPGMSLRELFMILLLVVLLVLLGF--- | |||||||||||||
4 | 4a01A | 0.08 | 0.07 | 0.86 | 0.83 | DEthreader | GSLVFLMKIATYANARTT--A---VG-AF--A--PEDDPRNVDNVGNVGDIAGMGSDLFGSYAESSCAAAPIVQLFCVAVGLWAGLIIGFVTEYYSNAYSPVQDVADSCRT-GA-ATNV-------ADAAGNTTAAIGKGFAIGSAALVSLALFGAVTVVLAGSLVSGVQIAISASNTGGAWDNAKKEKKAVITIGDPLKTSG-SL--L-------MA--SLA-FA | |||||||||||||
5 | 5mrwA | 0.07 | 0.07 | 1.00 | 0.51 | CEthreader | PLNPQQLPGLSWDLALNTAVSFVTNTNWRSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSMSTLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAPMGPVASQEAIKMLGALTNFVQMLAIFLIPTALCFAFGEVMGDRRQGRMLLWAMSVIFVICVGVVMWAEVQGMHDSFTALGGMVPMWLMQISGLYGMMLFVLLAVFIAGL | |||||||||||||
6 | 5h5mA | 0.06 | 0.06 | 0.96 | 0.68 | EigenThreader | IADAEST----RENRKQKIVAECNNLRQALQELLTEYEKSTGRRDKRTKDLRRHLRRAIVDHISDAF--LDTREIVSVARLSCQLSSVIQHTAAQLEKLAPQVAQAAILLCHQPTSKTAQENMETYKNAWFDKVRLLTDFLAVSEAHIVEDCERGIETVDCAAGSIRGRALRVCDVVDAEMDFL----QNSEYTETVKQAVRILKTQRVDQFAERASALANRQEAH | |||||||||||||
7 | 6pw4A | 0.14 | 0.08 | 0.57 | 0.37 | HHpred | --RIIAVDNLNILMAWFRMVSVFLSSAIGPLIQMMKQML----IKDVTRFALLVLVILLGFSVGMEALFQERVTGVIFYLIFAIVTAILLLNLFI---AMLADTYTRVS----------TQAMVEFRYRKAKSRRFVCPPFNLLHLVC------------------------------------------------------------------------------ | |||||||||||||
8 | 6w25A1 | 0.09 | 0.08 | 0.88 | 0.43 | MRFsearch | ---------LFVSPVVFVTLGVISLLENILVIVAIAKNKN------LHSPMYFFICSLAVADMLVSVSLGAQSFTVNIDNVIDSVICASLLASICSLLSIAVDRYFTIF------------YALQYHNIMTVKRVGIIISCIWAACTVSGILFIIYSDSSAVIICLITMFFTMLALMASLYVHMFLMARRQGANMKGAITLTILIGVFVVCWAPFFLHLIFYISC- | |||||||||||||
9 | 5a63C | 0.12 | 0.11 | 0.88 | 0.86 | FFAS-3D | ------------AAVFFGCTFVAFGPAFALFLIT---------VAGDPLRVIILLVSLLLASVVWFILVDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVSPYYFLTSAFLTAAIILLHTFWGVVFFDACE----RRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY- | |||||||||||||
10 | 5y78A | 0.08 | 0.08 | 0.95 | 1.01 | SPARKS-K | NKRTLNMWKYPWVLSTIQLGVGALYCTFLWVKPNVSKKLIKALSLVAISFTHVVKSAEPVFGAVGSALVLGTLVPIVSGVALSAATTAMISNVAFVTRNITSKFTMVDFKNEKTLI------------AQNTYALITIISFFMELPFALLMEGFPPLVSGSIMFCSLFYHLYNEVSYLCLDNVSVSFSIGNTIKRVIIIFGSILVFVTRLNFIGSTIAIIGTMLYS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |