>PF05098 (462 residues) ERELKYELQCDQKRAYDIYKMVQDDESFEIVESYTDIRDSGNNRTRLMNEANDLNRDLKT IKKKVTEKNVMTYVHEDWIIQMSNTTSLEEPSRIFGEIYDICRVNVYRMTGFCNVEIKFE ETFMNRSKSCYNGIHGNNIIKTLQKLNTMIDDGLVVNMPENNVRIGSDEILLRIRVELEY GYGNPNERDFAEFSEVVKCLLTYLHKDLYYTLHVAHDEMFNKIKYRNFKKTILSTEIDNG SPYEFYAKKLDGTRCKGITLNSSVQTNDNSYEDVQILYILGDDRKFHTFKLDQPLTSQKN VSLGLQLEQINDELFYITDILTMFIVDYNNVTQYNLDYNNKEDIDLRTALTLLPKLRDNN NIRIQRYYKECLFEQNVYNYETQTIPTDGLIAVTSDYELHKIKHVVTYELMYKGQNIFTD RSNKKYKILSDVHCNVNSIYECVVIHDVVTKILKERNDRYFP |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ERELKYELQCDQKRAYDIYKMVQDDESFEIVESYTDIRDSGNNRTRLMNEANDLNRDLKTIKKKVTEKNVMTYVHEDWIIQMSNTTSLEEPSRIFGEIYDICRVNVYRMTGFCNVEIKFEETFMNRSKSCYNGIHGNNIIKTLQKLNTMIDDGLVVNMPENNVRIGSDEILLRIRVELEYGYGNPNERDFAEFSEVVKCLLTYLHKDLYYTLHVAHDEMFNKIKYRNFKKTILSTEIDNGSPYEFYAKKLDGTRCKGITLNSSVQTNDNSYEDVQILYILGDDRKFHTFKLDQPLTSQKNVSLGLQLEQINDELFYITDILTMFIVDYNNVTQYNLDYNNKEDIDLRTALTLLPKLRDNNNIRIQRYYKECLFEQNVYNYETQTIPTDGLIAVTSDYELHKIKHVVTYELMYKGQNIFTDRSNKKYKILSDVHCNVNSIYECVVIHDVVTKILKERNDRYFP | |||||||||||||||||||
1 | 2fmdA | 0.03 | 0.01 | 0.42 | 0.70 | DisCoVER | -----------------------------ANSVCFTFTLIFQGDASVGSNK------ALQLTK---------VDSKGNPQ------GGSVG--R---ALYTAPIRLWQ---------------------------------------------------------------------------------------------------------------SSLVASFETTFTFSISQGSS-TPADALTFFIASPVVSVEFDTYPNTDIG--DPNYRHIGIDVNSIRSK---A--ASK-WDWTATAHISYNSAS--KRLSVVSSYP-----------------SSP-V--VV-----------SFDVELNNVG--------P----GWVRVGFSATT---------G-Q-------------YT-----Q----------T---------NNILAWSFRSSLM- | |||||||||||||
2 | 4z3wA | 0.06 | 0.04 | 0.62 | 0.67 | DEthreader | R----------------------------------VDLGSIERNILRVPPEVEP-FSPENLLIFAAGLLCNRTI--MGGFWAPKGYDKII-FRGKSPELVY----------------------IRDASHLKGAIETAEIIK--------------EPRAQVAAIGAASIEQRSSASVVRGTKDLCVPYILCNEVLIEGLGSPQEMKVHMCGAMKCFTDGFSANG--------------------LMTGEKINITQIEGQFPP--LEQEAFVEDWIQVP------P-PTVDMCCDIV----QEMMHYIDD-----ALGQCAGLS------------------FPLKPPYHIHNYPKMDTEKKKAYLVNIMRRDEQPPANH-------------LLDSYYKLK-------GWNDDG--IPTK-------E------------TLDDLG-LGYVGDEFKRG---- | |||||||||||||
3 | 6l7vA | 0.09 | 0.03 | 0.32 | 0.70 | CEthreader | QFKANFTACVSTEDYERIKTYLMTEMENSSMTRSVTHD---VWRHTYATDENGNPTRCVSIVRKKRLFVKNIVV-PLGAYNLRFAVSTETPT-------RLKDRLSITD---GMFRYDMTQVTEK------------------------------------------GVLMHEVEIEGVFSSKQLTESWLEELLRRAMRLATLRT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 4ckbA | 0.10 | 0.08 | 0.80 | 0.92 | EigenThreader | EINNEELVFILITLTNVVN-----ISTIQESFIRFTVTNKEGVKIRTKIPLSKVIDNIVWEKKSLVT---ENRLHKECLLRSTEERHIFLDYKKYGSSIRLELVNLIQT---KNFTIDFKYFLGSGAQSKSS----------LLHAINHPKSRP-----------------NTSLEIEFTPRDNVPYDELIKELTTLSRHIFM-------ASP------ENVILSPPINAPIKTFMLPLDLENLYAVTKTDGIPITIRVTS-------------NGLYCYFTHGYIIRYPVKRIID---SEVVVFGEAVKDKNWTVYLIKLIE--------------------NDRLEESKYVESKLVDICVFKSKEGPFTTEVVDMLSTYLPKQPEGVILFYSKGNIDFKIKKENQTANVVFEPIIFGESSYNGVNYLN-----NIYCLEYINTHNEVKSVVVPIEDYYGN | |||||||||||||
5 | 4ckbA | 0.15 | 0.12 | 0.79 | 0.37 | HHpred | ELELVFIK-PPLITL---TNVVNI---STIQESFIRFTVGVKIRTKIPLHGLDAIDNIVWEKKSLVTENRL---H----KECLLRLSTEERIFGSSIRLELVNLIQAKTKN-FTIDFKL--KYFLGSGASKS-----------SLLHAINKSRP------------------NTSLEIEFTPRDNPDELIKELTTLSRHIFM----A-SPENVILSPPINAPIKTFMLPKQDIVGL---DLENLYAVTKTDGIPITIRVTSNG-------------LYCYFTHLGYYPVKRII----DSE--VVVFGEAVKDKNWTVYLIKLIE----N------------DRL--EESKYVESKLVDRIVFKSKKYEGPFTTTSEVVMLSYLPKQPEGVILFYSKGPNIDFKIKKTIDQTANVREPIIFGESSIFVEYKKFSNDKGFIAEFLV----NGEILKPRIDKT-- | |||||||||||||
6 | 1ckoA | 0.15 | 0.07 | 0.45 | 0.62 | MRFsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GESRDDIVAKMKDDFEKLKQ------------------------------------NKYVVSEKTDGIRFMMFFTRVF---------GFKVCTIIDRAMTVYLLPKNIPRVLFQGSIFDGELCVDKKFAFVLFDAVVVSG-------------VTVSQMDLASRFFAMKRSLKPAILRYKEWIP----------KANAIYHTDGLIIMSVNFNLFKLKPHHTIDFIIMSTIGIFDPNLRKNVPVGKGYYNKGSIVECGFAD-GTWKYIQGRSDKNQA | |||||||||||||
7 | 4ckbA | 0.14 | 0.11 | 0.79 | 0.76 | FFAS-3D | NNELELVFIKPP--LITLTNVVNIST---IQESFIRVTNKEGVKIRTKIPLSKVHGNIVWEKKSLVTENRL---HKECLL----RLSTEDYKKYGSSIRLELVNLIQAKTKNFTIDFKLKYFLGSGA---------QSKSSLLHAINHPKSR-------------------PNTSLEIEFTPRDPYDELIKELTTLSRHIENVILSPPINAPILPKQDIVG-----------------LDLENLYAVTKTDGIPITIRVTSN------------GLYCYFTHLGYIIRYPVKRII----DSEVVVFGEAVKDKNWTVYLI-----KLIEN--------------DRLEESKYVESKCDRIVFKSKKYEGPFTTTSEVVDMTYLPKQPEGVILFYSKGPDFKIKKENTIDQIFVEYKKFSNDKGFPKEYGSGKIVLYNGVNEYINTHNEVGIILKPRIDK--- | |||||||||||||
8 | 4ckbA | 0.12 | 0.10 | 0.80 | 0.78 | SPARKS-K | NNELELVFKPPLITLTNVVN------ISTIQESFIRFTVTNGVKIRTVHGLDVKNIVWEKKSLVTENRLHK-----ECLLRLSTEERHFLDKKYGSSIRELVNLIQAKTKNF-TIDFKLKYFLGSGAQSKS------------SLLHAINHPKSRPN----------------TSLEIEFTPRDPYDELIKELTTLSRHIFMILSPPINAPIK-TFMLPKQDIVGLDLEN-------------LYAVTKTDGIPITIRVTSN------------GLYCYFTHLGYIIRYPVKRIIDSE----VVVFGEAVKDKNW------TVYLIKLIENDR------------LEESKYVESKLVDICRIVFKSYEGPFTTTSESTYLPKQP---EGVILFYSKGPI-DFKIKKTANVVFRMSSEKFSNDKGFPKEYGSGKIVLYVVVPAEFLVNG--EILKPRIDKTMK | |||||||||||||
9 | 4r04A | 0.10 | 0.09 | 0.85 | 1.26 | CNFpred | --DTNIKIKLDKDTRNFIMPTITTNEIR--NKLSYSFDGAGGTYSLLLSS------YPISTNINLSKDDLWIFNID----NEVREISIEN--------GTIKKGKLIKD-VLSKIDINKNKLIIGNQTIDFSGDIDNK-DRYIFLTCELD----------DKISLIIEINL-SYSLLLSGD----KNYLISNLSNTIEKINTLGLDSKNIAYNYTDESN---------NKYFGAISKT--SQKSIIHYKKDSKNILEFYNDSTLEFNSKDFIAEDINVFMKDDINTITGKYYV--DNNTDKSIDFSISLVSKNQVKVNGLYLNESVYS--SYLDFVKNSDGHHNTSNFMNLFLDNISFWINFVIDKYFTLVG-------------TNLGYVEFICDIYFGEWKTSSSKSTIFSGNNVVVEPI-ISTSLDFSYEPLDRYINKVLIAPDLYTSLININTNYYSN | |||||||||||||
10 | 2j5wA | 0.05 | 0.03 | 0.68 | 0.67 | DEthreader | ----------GEKKLVTHSNIYLQNGILYKKALYGPIIKAET-VYVHLKNLAS--PYTFHSHG------------------------AIYDDYMLLATCTRIYHS-------KDIASGLIGPLILDKEKEKHIDRE--F-----------------------------VV-MFSVVDENFS----DKDNEDFQQSNRMYS--TFG-----DVHAATINLFATLFDA------------------------------CQNLLKAKL--KGAYPLSIEPIGVVPTADPCLAKMYYSAPDIFTGLIGPMKICKKGSLQVEFYLFPTVFDENE-KEDEDFQESNKMHSMNGFQGL-WYLF-----LTLHMWPGVQTESTVTTYVWKIPERSGAGTE--------DSACIPWPLI----RKLEFALNLQGLTMHVGDEVHGHSFQYKH---------RGVYSSDVFH | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |