>PF05084 (215 residues) MAHGGIHLRQKRNFCPLTVSTIAVVFVVFMGVLVNSLGGVAVAADSDGVKQTPSETGSSG GQQEAVGTTEDYVNSSAMGGGQGDSLAEDDTTSDAAEGDVDPFPVLANEGKSEARGPSLE ERIEEQGTRRRYSSVQEPQAKVPSKRTQKRHRLIGAVVLAVSVAMLTAFFLRRTGRRSPP EPSGDGGGNDAGNNAGNRGNEGRGYGGRGEGGGED |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MAHGGIHLRQKRNFCPLTVSTIAVVFVVFMGVLVNSLGGVAVAADSDGVKQTPSETGSSGGQQEAVGTTEDYVNSSAMGGGQGDSLAEDDTTSDAAEGDVDPFPVLANEGKSEARGPSLEERIEEQGTRRRYSSVQEPQAKVPSKRTQKRHRLIGAVVLAVSVAMLTAFFLRRTGRRSPPEPSGDGGGNDAGNNAGNRGNEGRGYGGRGEGGGED | |||||||||||||||||||
1 | 3bogA | 0.07 | 0.02 | 0.35 | 0.67 | DisCoVER | CKGADGA-------------------H--GVGCPG---TA-GAAGS-VGGPG----------CDGGHGG--NG-GN-GNPGC--AGG-----------------VG------------G-----------AGGASGGTVGGRG-------GKGGSGGADGAP----------------------------GA----------------------- | |||||||||||||
2 | 4a01A | 0.05 | 0.04 | 0.78 | 0.83 | DEthreader | V------SG-------AT-AFSGAVMGFLLAANGLLVLYIA-YGLGGSSMA----GRGGV-AGMDLGSYAESSPLIVSSVGILVCLLTTLFATDFPALKQLVISTVMTIGVAFAVLWAGLIIGV--VIIPI---IASIF-F-AMYGIAVAALGMLSTIATGLAIDAYGPSDAGIRTAAANTAGDNAKKYE----VDTDP---------------- | |||||||||||||
3 | 3d9wA | 0.10 | 0.10 | 0.99 | 0.49 | CEthreader | AYLARIGFAGERAPTLATLRELVYRHTTAIPFELEAVLGRPVRLDLATLQDKLVHSRRGGYCYENAGLAGGLRPATHALLRVTTADDDRVWMCDVGFGRGPLRPYELRPQPDEFTLGDWRFRLERRTGELGTDLWVLHQFGRDGWVDRYTFTT--APQYRIDFEVGNHFVSTSPRSPFTTRPFLQRFHSDRHHVLDGLTLITERPDGSADIRALT | |||||||||||||
4 | 4d0pA | 0.11 | 0.11 | 0.98 | 0.50 | EigenThreader | VRQDLAQLMKAIQLSGAEQLEALKAFVEAMVNPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGLETYLKIARLYLEDDDPVQAEAYINRASLLQVCYARVLDYRRKFIEAAQRYNELSSERLEALKHALHCTILASAGQQRSRMLATL-----FKDERCQQLGILEKMYLDRIIREFAAMLMPHQKATTADGSSILDRAVIEHNLLSASK | |||||||||||||
5 | 6a2jA | 0.15 | 0.07 | 0.42 | 0.38 | HHpred | -----LEDPMNKALKALGVLTTFVMLILIGGALVTKTGSGQGCG-----RQWPLCHGRFFP-E--------------L---------------------------------------NPA------------------------SIIEWSHRFASGISIILVLSLAFWSWRKITPIFRE------------------------------------ | |||||||||||||
6 | 1vt4I3 | 0.23 | 0.10 | 0.42 | 0.73 | MRFsearch | ----------------PKYERLVNAILDFLPKIEENL------------------------------------------------------------------------------------------------------------ICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
7 | 6traA4 | 0.23 | 0.16 | 0.72 | 0.50 | FFAS-3D | -GRGGVFLG-----LFWMYNCISVVIFHFSWKMQSDVWGTV--APDGTVSHITGGNFAQSAIT-INGWLRDFLQASQVIGSYGSALSAYGLLFLGAHFIWAFLMFL-----FSGRGYWQEESIVWAHNKLKVAPAIQPRAL-----SIIQGRAVGAHYLLGGIATTWAFFLARI----------------------------------------- | |||||||||||||
8 | 4f8811 | 0.14 | 0.11 | 0.79 | 0.81 | SPARKS-K | -----------------SKKYTQQQYEKYLAQPANNTFGL---SPQQVADWFMGQAG-------ARPVINSY--------GVNASNLVSTYIPKMQEYGVSYLMYTVFEGNHYMYSNGLECLEHDLQTYFPPALSECYPATEDGALDRFYQSLWGDVMIPSTMAGNAWVWAYNYCVNNQGA--------APLVYFGNLAADPFTGGSIGDGKN-- | |||||||||||||
9 | 2uvaG | 0.16 | 0.06 | 0.37 | 0.47 | CNFpred | ---------------PVSFPLIGLVQLAHYMITCKTLGREPGE-----LLERFSGT---------TGHSQGIVVAAAIATA-------------------------------------------------------------------TWDEFATAAKRAVELLFWIGLRSQQAY---------------------------------------- | |||||||||||||
10 | 3kz4B | 0.03 | 0.02 | 0.82 | 0.83 | DEthreader | IYWK--DTLPDVREYFLNLYDQVLT------------ITTSNYILA-RSVVPD-LKEL---NDCFKTLIAMSGLLTVV----PND-MFIRESLCQAIVIIFQLHFVNNNNIRNNQEALLLVT--LTSVTSLLI-ATVIPSTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLMDEQGALPFVTDLYKVYKQVPQQFDFRN------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |