>PF05056 (470 residues) NNNISLKAVVDKSNNRVVFVESDEKFVDIVFSFLTMPMGSVVRLTRNRPPAAASIGCMNN LYNSVEILDKRYFRTQACKTMLLYPRNGAGNECKNLKLVINDGVQMQYLVCETDDCAISN YKLLSHYRNAICRCGNRMNWRIEVKERKPTRVVFDDQDEGVFVKGPIQLTISDELQVMPS STPASLSLFSKLGIKDTSGIEERTFLMGELEALSLLKCLLVSKTPLTEALLELEYSNLVV LGPNNMEDVEKISFRKSVILEGPASDEDDGKIYVKLMVSKSRNMVCYAEASEKFVELLFS FLTVPIGFIVKEMQESSSRGNHSINNLYDSIQDLDATQHLRSKKTTAMLVSPKLAPGFSY EGQLLNIEEYMHQPYYYVIIQQSGHFVTSDEMLIHSEEVISSSVLTVIDPKSPRYDTLSG RGFLKGPAMFTITDDLTITPLSSVTGLSAIRKLKVPFSDLEEHVVYVGKE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NNNISLKAVVDKSNNRVVFVESDEKFVDIVFSFLTMPMGSVVRLTRNRPPAAASIGCMNNLYNSVEILDKRYFRTQACKTMLLYPRNGAGNECKNLKLVINDGVQMQYLVCETDDCAISNYKLLSHYRNAICRCGNRMNWRIEVKERKPTRVVFDDQDEGVFVKGPIQLTISDELQVMPSSTPASLSLFSKLGIKDTSGIEERTFLMGELEALSLLKCLLVSKTPLTEALLELEYSNLVVLGPNNMEDVEKISFRKSVILEGPASDEDDGKIYVKLMVSKSRNMVCYAEASEKFVELLFSFLTVPIGFIVKEMQESSSRGNHSINNLYDSIQDLDATQHLRSKKTTAMLVSPKLAPGFSYEGQLLNIEEYMHQPYYYVIIQQSGHFVTSDEMLIHSEEVISSSVLTVIDPKSPRYDTLSGRGFLKGPAMFTITDDLTITPLSSVTGLSAIRKLKVPFSDLEEHVVYVGKE | |||||||||||||||||||
1 | 2qaeA | 0.08 | 0.06 | 0.67 | 0.68 | DisCoVER | -------------NPYDVVVIG----GGPGGYVASI-----------------------------------------------KAA-QL--GM--KTACVEKRGALGGTCLNVGCIPSKALLHATHGEGVTMMQKERAVKGLTG------GVEYLFKKNKVTYYK-GEGSFKKTIIATGSEPTELPFLPFKVVLSSTGAPKTMVVIGG--GVIGLELG-------SVWARLGAEVTVVEFACAKMKFMTSTKVCEALLVS-------VGRRPFTFVFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILA---PGH----VN-YG--VIPAVIYTMPEV-ASV--GKSYKVGKFPFNANSRAKAVST-EDGFVKVLV-------DKATDRIL--------GVHIVCTTAGLIAHPTMSEALK-----EACMALFTIN------------------------------ | |||||||||||||
2 | 6lz1A2 | 0.07 | 0.04 | 0.60 | 0.67 | DEthreader | ---PFARLQLLKEP---SWVEHDTNIPNG--ES-IRQFLLGQHFFEKEFG---------V-RCRTFWLPDTFGYS-SQIPQICRL-------------CGMDRVICHMPTYADNNDVLHSDQHK-L----AGLLVFGIGDG----PSWNGE--------------RGTY------LK-------------------------------V--AL-DAEYVSTSISYPKESLQD-------------------W-D--L-------------HDVLPG------------VYKDAIPMSKVLKNTEALLWQAIEQLGFKKAQLCLLN-TL-PWN---------------VRGVITETEN-L--------------------PAAAYQFILVTIGVSIESGPLRASTTCEVWFLKVEFPVVSVLNCKYGFSLVRAHKFNSNILSHIKMAEKSIILRVYESLFEI--------- | |||||||||||||
3 | 1vt4I3 | 0.05 | 0.05 | 0.94 | 0.61 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 3la4A | 0.08 | 0.06 | 0.84 | 0.73 | EigenThreader | ----------------------MKLSPREVEKLGLHNAGYLAQKRLARGVRLNYTEAVALIASQIMEYARDGEKTVAQLMLGQHLLGGELQEALFGSLLPVPSLGRKAVIDRPFIEVNPYLTFDLNIAAGTPGDK---SVTLVSIEGNKVIR-GGNAIADGPVNKDASEGFTKEDPNCPFNTKEYANKYG--PTTGDTNLLAEIEKDYA------------LYGDE----CVFGGGKVIRDGMGQSC--------------GHPPAISLDTVITAVIIDYT--GIIKADIGIKDLVYEAISSGGTRAT----------TCTPSPTQMRLMLQSTDDLPLSSSKEIIKAGAMGLLHEDWGSTHDIQINIHTDTLNIHTYHSEGAGGGHAPDIIK---VCGIKNVLPSSTNPTRPLTHLDREIDIGAISIISSDSQAMGRVGEVISRTWQTADGPLKCDRYIAKWKVIKGGM | |||||||||||||
5 | 3f2bA | 0.11 | 0.09 | 0.82 | 0.52 | HHpred | --------------------------VKPIKDELYTPREEIREMSYRRAGDPLVEERLEKELKSIIGHGAVIYLIKKSLGYLVGSRGSVGSSFVATMTEITEVNPLPHYVCPNCKHSEFDGSVGSGLPDKNCPCGTKYKKDGHDIPFKGDKVPDLFGEDNVYRAGT----------IGTVADKTAYGYASDHNL-----------ELRGAEIDRLAAGCIVVPDEIYDFT-PIQYPADDTSS-----EWRTTHFDF--------HSHD-NLLKLDILGHDDPTVIRMLQ---DLSG--IDPKTIPTDDVMGIFSSTEPLG--VTPEQIMCLEETRPKTFVWLGNAQELIQTCTLSEVIGCRDDIMVYLLADVPEWY-ID-SCKYMFPKAHAYVLMKVHAECERGFSFKNIDLY-----------RSQAEFVIDGNSLIPPFNAIPGLAIVRAREGSKEDLQQRG-KLS-- | |||||||||||||
6 | 6du7A | 0.13 | 0.06 | 0.44 | 0.20 | MRFsearch | ---------------KTDLFVRRDRPLRGF-----------------------DSYIVEGLVKEMERTN----------------------------LPLHTHKVPVKLEKTT-------DGITIHFED----GTSHTASQVIWATQLEKAGVTLNERGFIQVDEEGIYALGDVKELTPVAIKAGRTLSERLFTVVFSHPAIGTVGLTEEQAIKE------------------------------QIKVYKSSFASMYSACT----RNRQESRFKLITAGSEEKVVGLHGIGYGVDEMIQGFAVAIKM------------GATKADFDATV------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6sgyA | 0.13 | 0.10 | 0.76 | 0.55 | FFAS-3D | ------AILADRSTSA-LYVRVGEQL---------HPVLTSARLISGSPDNPTMVK-----TSEIDKFPRGNLLG-----IPGAPE----------RMVQNAATDAEWTVC-----------------DAVGGANPGVTVIAGPLGADGERAAPLPPDHAVLVHNPGDWLLWDGKRSPIDLADRAVTDALGLGGQALAPR------------------------PIAAGLFNAVPAAPALTAPVI----------PDAGAAPQFELSLPVPVGAVVVAYDADNTARYYAVLSDGLQPISPV----LAAILRNTDSHGFAQPPRLGP--DEVARTPMSRGLDTS---------------AYPDNPVTLVEASAHPVTCAHWTKPSDAAESSLSVLSGAVLPLAEGLHTVDLVGAGAGGAANRVALTAGSMFWVSDTYGIDTAEDDKVVAAL---GLSTSPLPVSQFAAGPA | |||||||||||||
8 | 6s8bJ | 0.12 | 0.10 | 0.77 | 0.77 | SPARKS-K | LMSLKLKALLTGGYNRHSINPFYEELVTEIKGLWRWWNRVLFNTLAYSTKGKLYT------YESIDRLFEDVFGSE-------NKKSA-------VRLEVGNDNRFELSYVELDKVRNYKRKVSLDFID------NTLIAEIEGSTKIPISFKSNLD-----IDKI------------------IKDLVHNNKLFELLGFKSVEIDATKEILRDLITNYLEY-------FNIKQ----------------------------------EVTFTLNIYLDKSREH------KQNF-EDKLKFALYSLLVFILLIGRKTSRGFGSCKKIEDLAKNFLKISSGNEKSKIESILDCCIDTLYIENNILSEIDPKKNVVYFFEVKRINDKEGLDIGKNYLCETCETVSSFNIVDFLLSEGSYEHRNSSDNSNNSYLIGYILHSSYIDIKYVRCILEKLTYCVI------------ | |||||||||||||
9 | 3apcA | 0.14 | 0.07 | 0.50 | 0.72 | CNFpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------TMQLLDCNFSDENVRAIAVQKLE-----SLEDDDVLHYLLQLVQAVKFEPYHDSALARFLLKRGLR--------------------------------NKRIGHFLFW------FLRSEIQQRFAVILEAYLRGCGTAMLHDFTQQ----VQVIEMLQKVTLDIKSLS-DVSSQVISQLKQKNLQNSQLPESFRVPYDP----GLKAGALAIE-----KCKVMAS---KKKPLWLEFKCA----DPTALSNETIG--IIFKHGDDLRQD-MLILQILRIMESIWLDLCLLPYGCISTGDK | |||||||||||||
10 | 2pffA | 0.06 | 0.04 | 0.61 | 0.67 | DEthreader | GGGGGGGGGG-GG------GGGGGGGG-GGGGGGGGGGGGGGGG--G---------------------------------------------------GGGGGGGGG-----------------------------------GGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGGGGGGGVTFKDKYVLIGAEVLQGL------VV-T-VEALIEFIDEKNGG----PELFNGYNTGWNAKYEAIAGITDPYEM---------------NCSGSGM--------------------------------ILQESFINTMKTPVTSVEGGFMEAQGAGIQIIMQADIVA--------NLNMKYRKRLVEAQQNDKGALLASFHNESTI-FQKAGWMMNGALQ------ILNSGIKV--D-YNYVASAKSAYKFFHMNLF-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |