>PF05045 (504 residues) ILVVCNGKLTSEGRKKLEEVTPNVLVRENKGFDVWAYKTGLEHYGWDKIKSFDEVIMMNF TIMGPVYPLEEMFHAMDKRDLDFWGITKFHEFKDGDPFGTIPYGYIPAHIQSHFIAVRKP MLNSLEYQSYWDNMVMIHDYREAVGCHEAIFTKKFSDAGFKWDVYADLEEGYNNHPVLCA TRRMIEEKRCPIFKRRSFMQNYDNILHDTAGENAIEAYEYIDRHTDYDVDMIWQNILRLE NQADIKKNMQLNFVLPEDMSKPADDILKNRKVALVLHFYFEDLAEYCLHYVQSMPPEADI YVTTGSEKKKELIEKTFSVLPNKVKVILIENRGRDVSALLVGTKDFIMDYDYVCFVHDKK VTQLKPDTVGASFSYKCFENLLTSRDFVNNVLHTFEANPRVGLLTPPPPNHGDYYITVGL EWGKNYKITKKLAEKLGITVPIAEEKEPIAPLGTMFWFRPKAMKLLFDQDWEYTDFPPEP NKTDGTLLHAVERIYSYVVQQEGY |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ILVVCNGKLTSEGRKKLEEVTPNVLVRENKGFDVWAYKTGLEHYGWDKIKSFDEVIMMNFTIMGPVYPLEEMFHAMDKRDLDFWGITKFHEFKDGDPFGTIPYGYIPAHIQSHFIAVRKPMLNSLEYQSYWDNMVMIHDYREAVGCHEAIFTKKFSDAGFKWDVYADLEEGYNNHPVLCATRRMIEEKRCPIFKRRSFMQNYDNILHDTAGENAIEAYEYIDRHTDYDVDMIWQNILRLENQADIKKNMQLNFVLPEDMSKPADDILKNRKVALVLHFYFEDLAEYCLHYVQSMPPEADIYVTTGSEKKKELIEKTFSVLPNKVKVILIENRGRDVSALLVGTKDFIMDYDYVCFVHDKKVTQLKPDTVGASFSYKCFENLLTSRDFVNNVLHTFEANPRVGLLTPPPPNHGDYYITVGLEWGKNYKITKKLAEKLGITVPIAEEKEPIAPLGTMFWFRPKAMKLLFDQDWEYTDFPPEPNKTDGTLLHAVERIYSYVVQQEGY | |||||||||||||||||||
1 | 3f1yA | 0.11 | 0.05 | 0.41 | 0.55 | DisCoVER | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPASAAW--FRQ--RSYDYG-QFPEDLARRKLGLTVSAVLPSRN--VADTVGGIIDEILLIDQILVVDAD--SEDGTAGVAASHG--AEVYSENDAHGKGDAMWRALSVTR--GDLVLYIDAD-----------------TR--DF-RPQLAYGVLGPVLEVPGVRFVKAAYRRPEEDG--GGRVTELT---AKPLFNLF-Y-PEL---AGFVQPLAGEFVADRELFCSIP---F-L--T--G--------YA-VETGIMIDVLGAM- | |||||||||||||
2 | 4y98A | 0.06 | 0.03 | 0.46 | 0.51 | CEthreader | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DFQDQVAFITGGASGAGFGQAKVFG--QAGAKIVVADVRAEAVEKAVAELEGLGITAHGIVLDIMREAYARAADEVEAVFGQAPTLLSNTAGVNSFGPIEKTTYDDFDWIIGVNLNGINGMVTFVPRMIASGRPGHIVTVSSLGGFMGSALAGPYSAAKAASINLMEGYRQGLEKYGIGVSVCTPANIHGLEPEKLAEAIK--KGVEDNALYIIPYPEVREGLEKHFQAIIDSVAPM | |||||||||||||
3 | 2z86C | 0.08 | 0.06 | 0.72 | 1.18 | EigenThreader | QKADDGSKENIEEIVREFESLLNYVRQKDYGYQLCAVRNLGLRAAK-----YNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPKSLINEIPEIITNQNKSVTPFRFFGNVAFAKKWLAGWF-------DEEFTHWGG-----EDNEFGYRLYREGCYFRSVE----------------------GAMAYHQEPPGKENIQLLQQKVPYFY----------------------------------RKKEKIESATLKRVP------LVSIYIPAYNCSKYIVRCVESALNQTITDLCICDDGSTDDTLRILQEHYANHPRVRFISQKGIGSASNTAVRLCR-----GFYIGQLDSDDFPD-----------------------AVELCLDEFRKDSLACVYTREGN----LISNGYNW----------------PIYSREKLTSAMICHHFRMFTARAWN--------LT---EGFNESISNAVDYDMYLKLSEVG---PF | |||||||||||||
4 | 4hg6A | 0.13 | 0.07 | 0.54 | 0.29 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAVVLVA-LLKP-FA---DKMVPR-F-LLLSAASMLVMRYWFWRLFETLPPDASFLFALLLFAVETFSISIFFLNGFLSPTDRPFRPLQPEELPTVDILVPSYNADMLSVTLAAAKNMIYPATVVLCDDGQERRRELQQLCRELG--VVYSTERNEHAKAGNMSAALER--LKGELVVVFDAD---------------------HVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPLGDRCPPENEMFYGKIHRGLDRWGG---------A-FFCGSAAVLRRRALDEAG-------GFAGETITEDA--------ETALEIHSRGW | |||||||||||||
5 | 4hg6A | 0.12 | 0.07 | 0.57 | 0.32 | MRFsearch | -----------------------------------------------------------------------------------------------------------------------------------------PVLLFLLWVALLVPFGLLAAAPVAPSAQG------LIALSAVVLVALLKPFADKMVPRFLLLSA-----------ASMLVMRYWFWRLFLDASFLFALLLFAVETFSISIFFLNGFLSTDRPFPRPLQPEELPTVDILVPSYPADMLSVTLAAAKNMIYLRTVVLCDDGGERRRELQQLCREL--GVVYSTRERKAGNMSAALERLK-----GELVVVFDA-------------------------SRDFLARTVGYFVEDPDLFLVQTP-----HFFINCPPENEMFYGKIHRGLDRWG----------GAFFCGSAAVLRRRALDEAG--GFAGET-------------ITEDAETALEIHSRGW | |||||||||||||
6 | 6pd1A | 0.09 | 0.08 | 0.83 | 0.75 | FFAS-3D | IVIGTG--HCNEYYDNLAKKYPAIITVKNENYANTGSMGTL-EVCASFVNE-SFLLLESDLIY----DSAGLFSLINDERKNLILASGATKSGDEVYLEADEKNCLLKNIFGELVKLTKSTL--DKMCAYAKIHHSDLPKME----YEHALLEAAKTIPVAIKRIIDNEDHLEMAVKNIYPHIVENEKLRAVRREVLLNPGPATT--------TDSVKYAQVSADICPREKAFGDLMQWL-CDELKLFALASETNPDE------------YETVMFGCSGTGADEVMVSSC--VPDTGRLLVIDNGS-YGARMAKIADIYKIPMDIFKSSTYEPDLQKLEAEFAT--KKYTHLACVYHETTT-----------------GLLNP---LHIICPMAKKYGMV-TIVDAVSAYC------------------------GMPMDLKSNKNIQGMAGGFVICNKAELEKTKDYPMRFAKTHQTRFTPPVQTMYALRQAVLETKQET-- | |||||||||||||
7 | 3beoA | 0.08 | 0.05 | 0.68 | 0.64 | SPARKS-K | VMTIFGT-----------------------RPEAIKMAPLVLELQ-KHPEKIESIVTVT----AQHR---QMLDQVLSIGI------------TPDFDLNIMKDRQ--------------------------------TLIDITTRGLEGLDKVMKEAKPDIVLVHGD------TTTTFIASLAAFYNQIPVGHVEAGLRTW----DKYSPYPEEMNRQLTGVMADLPTAKSATNLQKEKDESRIFITGNTAIDALKTTVKETYSHLGNNR-LVLMTAHRRENMRNMFRAIKRLHEDVQVVYPVMNPVVRETANDILGDYGR---IHLIEPLD------VIDFHNVAARSYLMLTDS----------------GGVQEEAPSLG----------------VPVLVLRDTTEAGTLKLAGTDEETIFSLADELLSD------------------------KEAHDKMSK---ASNPYGDGR---------ASERIVEAILKHFNK | |||||||||||||
8 | 3sqwA | 0.10 | 0.08 | 0.76 | 0.97 | CNFpred | --------LDKEIHKAITRME-----------LTPVQQKTIKPIL-----EDHDVIARAKTGTGKFAFLIPIFQHLINT-----------------------KFDSQYMVKAVIVAPTRDLA-------------------LQIEAEVKKIHDMNYGLKYACVSLVGGTD-------FRAAMNKMNKLRPNIVIAT-----------------PGRLIDVLEKYSRFVDYKVLDEADRLLFRDDLETISGILNEKNS-------KSADNIKTLLFSATLD----DKVQKLANNIMNKKECLFLDTVDKNEPEAHERI-----DQSVVISEKFANSIFAAVEHIKKQIKESNYKAIIFAP-------TVKFTSFLCSILKNEF-TQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPELANYIHRIGRTARS-------EGSSVLFICKDPFVRELEDAK-IKSEVLEAVTEEPEDISDIVISLISSYRSCIKE | |||||||||||||
9 | 6fxkA | 0.06 | 0.04 | 0.63 | 0.67 | DEthreader | LVITVA------Y---RTLGLGQKVR-------------WL-KKEMEKYADREDMIIMFVDSVILA-SP--T-----------ELLKKFVQS-----A-EVG---------GFIGFATT-HQ------GLREKLSLN-LDHKSR--------------------------------I----------------FQNL-GALDEVVL-KFDRNRVRI---------------VV-HGNGPTKLQLNYLGNYGWT-GC--CNQD--Q--PPPRVFLAVFVQPTPFLPRFLQRLLLLDYPPVLFLHNNEVFHEPHIADSWPQLHFSAVKLVGPEALSPGEARDMAMDLCRDECEFYFSLDA---------------D--AV---LTNLQTLRILIEEN--R--KVIAPMLSRGKLWSNFWGALSPDEYY--------------------NVPYI-SQAYVIRGDTLRMELPQRDVFSGSD--------TDPDMAFCKSFRDKGIFLH | |||||||||||||
10 | 2vg8A | 0.11 | 0.09 | 0.84 | 0.52 | MUSTER | VAIIPSP-----------------------GMHLIPLVEFAKRL--VHLHGL-TVTFVIAGEGPPSA-QRTVLDSLPS-SISSVFL-------PPVDLTDLSSST---RIESRISLTVTRSN--PELRKVFDSFVEGGRLPTAL-LFGTDAFDVAVEFHVPPYIFYPT--TANVLSFFLHLPKLDETVSCEFR-----ELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVN-TFFELEPNAIKALQEPGLDKPPVYPVLVNIGKQEESECLKWLDNQPLGSVLYVSTLTCEQLNELALGLADSEQRFLWVIRSPSGIAN---------------------SSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF-QAQVLAHPSTGGFL----THC-VSGIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV----ARVVKGLMEGE-EGKGVRNRVLKDDGTSTKALSLVALKWKAHKKE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |