>PF04948 (341 residues) DNIITGKSFSYRDWDISEYFKNCLDDTVPSCTNVCSNFDNVIVSSNTISKLLIADIPKID KSISCAYSDDKKSTVELNRVSRFGKLILLNNEKNVVYITGTNNNVVYVILTLMRNNDCDK GSCEIKILKDNDEDNISRLLDEQRFAIIQGNQDALVSGNNILILILIFDEKNFPFIPLIR SISNNDVFISRHNRIHEEIPDKNWFKFYVELRHCYTTSLMLVIDGTVLYVGTDKDTHCLI SKGRANKQEAIDDCHCCYNDVSLCVFDKRELLQKTICSSIRGGLHIIIKTIGNFSAGAVG IIPKFDYIKITMSAACIMLTKDDKLSGKTNIGSYIYGIAHR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DNIITGKSFSYRDWDISEYFKNCLDDTVPSCTNVCSNFDNVIVSSNTISKLLIADIPKIDKSISCAYSDDKKSTVELNRVSRFGKLILLNNEKNVVYITGTNNNVVYVILTLMRNNDCDKGSCEIKILKDNDEDNISRLLDEQRFAIIQGNQDALVSGNNILILILIFDEKNFPFIPLIRSISNNDVFISRHNRIHEEIPDKNWFKFYVELRHCYTTSLMLVIDGTVLYVGTDKDTHCLISKGRANKQEAIDDCHCCYNDVSLCVFDKRELLQKTICSSIRGGLHIIIKTIGNFSAGAVGIIPKFDYIKITMSAACIMLTKDDKLSGKTNIGSYIYGIAHR | |||||||||||||||||||
1 | 5jvvB | 0.07 | 0.04 | 0.59 | 0.75 | DisCoVER | -SYTL----------------------------------KD---------SLSGKF--L--------------------AFSFFADR-DPTNGFVHYVSRAEGEGLVKV----------------------------------------------T-----GSVYLGVDHTRKSVRLESTDKIDHGLVIAD---------------IKHMPGICGAIDIIEGVNQSQNTMVLHTKGNCEITSDDQTGTTTSNQCSLDAGAGCVVQGTPGSYGGVYAMQWTDEFIKLWFTPMGNFKGTCDIGKEFKPQKL--VF-DT--TFCFVAKPEEFKEAYWEIYLTY- | |||||||||||||
2 | 1i7qA | 0.03 | 0.02 | 0.62 | 0.67 | DEthreader | LQSLLV-DSAL--RITAVSVQAPLLPLLD----------------------------E-ALP-EVLTFPAIDQARLRSLS--VFDALTILLVSVMLGLFAYDQRCDFCFYLAEASALQLEQLQAEL-----QPIPH----------APLGPYQLK--------FMQDDDF--------------------------------------LFGA----SPESALKDIEIYPIAGTMRLALMLV--------DLARNDLARICQ--SRYV--AD-LTKV-------------VMHLVSRVVGTLRDLDHAYQACMNMGTLSGMIALR-T-RGSYGGRVGYFTVN | |||||||||||||
3 | 2i6qA | 0.06 | 0.06 | 0.96 | 0.54 | CEthreader | LNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVGNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKAVIFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVS------------WGLYNPCLRKRAPRSKVPPPRDFHINLFR | |||||||||||||
4 | 1vt4I3 | 0.05 | 0.04 | 0.75 | 0.67 | EigenThreader | GGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------GGGGGGGGGG-----GGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGG----GGGGGGGGGGGGGGG--GGGGGGGGGG--GGGG------------------------------------ | |||||||||||||
5 | 3n91A | 0.14 | 0.10 | 0.68 | 0.30 | HHpred | ------------------------------------DYQTVYFANQYGLRTIELGESEVDNTLDNQHKV-IK--------------AAW----GGGY--TNRNN-VVINF------KVDESLCDNLYFKD--TDQPL-VP-PASYYTLASDR-IAIPGQIA-GVEVQLTDDFFEVIPLLTNVGADSILQGKP---VVENPVQNFVLYAVKYVNPWHGE-YLRR-GIDHATVA-GTS----KDIIRHEQFVEND--------EVVNISTKDNLLTLSGKDISYTVRLSFAEDGSCTVHSSGKFVSKG--------------EKNSLGGKDRNAIYL------ | |||||||||||||
6 | 1nkgA | 0.09 | 0.05 | 0.53 | 0.57 | MRFsearch | ------------------------------------------------------------------------------GITTSSSAYVIDTNNQLKFTVSRSSCDITSIIHYG---------TELQYSSQGLGSATVTATQSGDYIKVTCQYMVVHNGDPIIHMATYITAE----------------------------PSIGELRFIARLNSAIEGSDVFLVGSETRSKFIDDQRHCIAGD-----------------AHRVCMILNNALYWYMYRMGLHGPYSMYFSGRGKVAGTASGADS---------------------------SMDWVVHWYN- | |||||||||||||
7 | 4dqaA | 0.11 | 0.08 | 0.70 | 0.47 | FFAS-3D | ------------------YFESFSVEDEDVTFDL-----VSRLSSATSSQVDV-SYSVAEPSVVDEYNAKYGTNYEL-------DVSQVKLSSTTSSISSGKLYADNIEVELSGLEALKAGNSYVLTLSGTNIAYFFFSKPLKITKAGNFSNHYISVKFPSFTYEALIN---------VDYFLDNNTIGTEGVILRKPLLTNRWYHVALTYDQP-TGKTGIYVNGEKWAGSDPNSDGFYIGRIYGFKWGERSE---------VRVWSENQLKQNLGVDPASEGLALYYK---------------------------------------------------- | |||||||||||||
8 | 5nuvA | 0.10 | 0.09 | 0.83 | 0.62 | SPARKS-K | --------------------------EVRVPATALCVFDAVQFSPGSRLLATGGMDRRV--KLWEVFGAACEFKGSLSGSNAGITSIEFDSAGSYLLAASNDF-ASRIWTVRHTLTGHSGKVLSAKFLLD--NARIVSGSHDRTLKLWDLRSIKTVFAGSSCNDIVCTEQC------VMSGHFDKKIRFWDIESIVREMELLGKI-TALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAE-----------GSLYIWSVLTGKVEKVLSKQH-SSSINAVAWS-------PSGSVSVDKGCKAVLWAQP-- | |||||||||||||
9 | 5nuvA | 0.11 | 0.08 | 0.76 | 1.12 | CNFpred | --------------------------------------NAVQFSP--GSRLLATGGMDRRVKLWEVFGAACEFKGSLSGSNAGITSIEFDSAGSYLLAASN-DFASRIWTVD-------DYRLRHTLTGH---KVLSAKFLNARIVSGSHDRTLKLWD-SSCNDIVCTEQ------CVMSGHFDKKIRFWDIR---------ESIVREMELL---GKITALDLNRTELLSCSRDDLLKVIDLRNAIKQTFS-GFKCGSDWTRVVFSPD---GSYVAAGSAEGSLYIWSVLTGKVEKVLSKQ------HSSSINAVAWSPSGSHVVSVDKGCKAVLWAQP-- | |||||||||||||
10 | 4c1oA | 0.05 | 0.04 | 0.71 | 0.67 | DEthreader | GMYEVLPMIQREF---HV--S------------TD--T--WKA--GDL-TFTIYSPV--KS-VPNPDTAKEEDLKFALVPAVIAELTIDNTSPRRAFFGFEGNDGTAIVSKH---------SDVRSALHFSIENWTF-----------GKVGALIMDTPMRTYQFAVCFYR------------------WLS------------M--AIYVNEMMTFDLVDLFF-LKPTVKNVLDLCAVYIETKDWAWRQ-----K--IL-CAAFPYFNCHEALFIRARKHLQYV------K-LCQAWEAGAKADAAHVAWLTHLSVWSWS--ISG-S-KYYPRGVSIWLG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |