>PF04936 (186 residues) KVFDAYIEGEKKATGTIDEIADYFDISRNSISLWIKNGKDPKKANPKYKHAILNKEKTKE LMEQKKKEERKLPASVYDYYDKGEFIMTGTAREISQFLNIGKHNVYSYIQVGKHAFDYRK TRKHAILNEAETRKRFPLLSVSSEEELIETKEKERRKHETKEERRLRRNIRAQMAIENSR KDDSVF |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KVFDAYIEGEKKATGTIDEIADYFDISRNSISLWIKNGKDPKKANPKYKHAILNKEKTKELMEQKKKEERKLPASVYDYYDKGEFIMTGTAREISQFLNIGKHNVYSYIQVGKHAFDYRKTRKHAILNEAETRKRFPLLSVSSEEELIETKEKERRKHETKEERRLRRNIRAQMAIENSRKDDSVF | |||||||||||||||||||
1 | 3g3zA | 0.10 | 0.03 | 0.32 | 0.65 | DisCoVER | FAVLYTLAT---GSRTQKHIGEKWSLPKQTVSGVC-LALIEWQEGERRKRLLSLTEGKAYA-----------------------------------ALT--------------------------------------------------------------------------------------- | |||||||||||||
2 | 1wdlA | 0.09 | 0.06 | 0.73 | 0.83 | DEthreader | ---GKAITLKGESVNKF--N---L----------------GVIVSSGKDVFIVGAD-ITE-FV-EN--FKLPDAELIAGNL---EA-NKIFSDFE-----PTVACAFRVMA-SAKIGLP-----E-R----V-AVVTKLGALIKRAILDYKAKRQPKLEKFGRDKALEVEAAGFAKLATSASCLIF | |||||||||||||
3 | 3w6jB | 0.11 | 0.09 | 0.81 | 0.56 | CEthreader | AIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEEGIQLVELGGVFLLATKKEHAPYLKKLVEAPGASPLSQAALETLAIIAYRQPITRAEIEEIRGVKSDKPLQTLMARALIKEVGRAEGILYGTTPEFLDYFGLKTLEELPPLPEW------------------------------------ | |||||||||||||
4 | 6juvA | 0.09 | 0.08 | 0.85 | 0.65 | EigenThreader | ALVEAALFVAGRPLS-LKELSKALGISLEYLEKLIELIASEYEERKSAIEVKWVEYSQ-----------KELRAGELKTLALIAYLQPVEQSKIIKLRSQAYEHIKKLLE----GLIYAERTKLLGTTQKFAELYGFPEND--PELIKEAFKKVIHSEYADLEKIEKNNRKDKREE---------- | |||||||||||||
5 | 3d6yA | 0.12 | 0.06 | 0.51 | 1.00 | HHpred | --------------------------------------------------------------------------------------KESSIGEVSKLANVSIKALRYYDKIDLFKPAVDPDTSYRYYTDSQLIHL-DLIKSLKYIGLEEMKKAQDL-EMEEQERQIREKLDFLLVKKRMKRQ---- | |||||||||||||
6 | 3sqnA | 0.09 | 0.08 | 0.92 | 0.47 | MRFsearch | --LEQLLN---VPQLTAKRLAAQIQTTERTVFSDLQYIRSQWSIETDSSGIRLRNQQTNELWSLFL-----PQSISIQLLKELLFTKELVTTSFLSTSGVSYETLKRHIKKNQAHLTIQLTTTIQLIGASNIRIFYHRLYSIHEEHYFQFLKQVYSSELTVETEEIFGACWFFINTIRNKA----- | |||||||||||||
7 | 5c8dE | 0.14 | 0.12 | 0.83 | 0.71 | FFAS-3D | ------------GVYTIAEVEAMTGLSAEVLRQWERRYGFPKPRRTPGGHRLYSAEDVEALKTIKRLEEGATPKAAIRRYLAQEVRPEDLGTGLLEALRGDLAGAEALFRR-----------GLRFWGPEGVLEHL-------LLPVLREVGEAWHRGEVAEEHLASTFLRARLLLDLAGFPPG-- | |||||||||||||
8 | 6e6aB | 0.10 | 0.09 | 0.84 | 0.67 | SPARKS-K | ----HLYQDLQREVGSLKEINFMLSVLQKEFLHLSKEFA------TTSKDLSAVSQDFYSCLQAFRDN-YKGFESLLDEYKNST-------EEMRKLF--SQEIIADLKGSVASLREETP-------LAEEVRRLAHNQQSLTAAIEELKTIRDSLRDEIGQLSQLSKTLTSQIALQRKLEHHH-- | |||||||||||||
9 | 5d8cA | 0.13 | 0.08 | 0.60 | 0.71 | CNFpred | ------------MTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLS----------------------------LLQCLKNTGMSLKDIKRFAECT------------GDDTIEERLSLFE-----------------------NQTKNVKCQIAELKRYLDLLEYKLAF | |||||||||||||
10 | 6fec1 | 0.05 | 0.04 | 0.81 | 0.83 | DEthreader | -HLETRLVQLD------------W---FKAVEDIHG-------------MA-YYNKVSTVFWKSAIPITPRNLRLLQQVAQIY-QS-IEFSRLTSL--VPFAQLERAIVDAHDLQVRIDHTSRTLSFGSLNYATEDGPSPSEQL-MSVLAKALEVIPAHIQEKEEQHQLAVTAYLKNSRKEHQRIL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |