>PF04922 (397 residues) REPYMDEVFHVPQAHKYCHGRFTEWDPMITTLPGLYLVSVGVIKPVVWLADLTGDVVCST AMLRFINLLFNCGNLYLLYLLISKLHSREKMRSTSRRVLSALSLSTFPVLYFFNFLYYTD AGSTFFVLFTYLMTLYGCHKAAALLGVCSVLFRQTNIIWVAFCAGTLVATKMDEAWRTEH SKKREEKSPPTQIPLSLSGVRRLMIFMLEFFSSAYHMKAVLQVAWPYAAVALGFLGFVVL NDGIVVGDRSSHEACLHFSQLFYFFSFSLFFSLPVSLCYQRVMRFLQALKKQPLFFLCVT TVSLLMVWKFTFVHKYLLADNRHYPFYVWKNVFQRHELVRYLLVPVYTFAWWNFADSFKS RSLFWSQAFLVCLLVATVPQKLLEFRYFIVPYLMYRL |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | REPYMDEVFHVPQAHKYCHGRFTEWDPMITTLPGLYLVSVGVIKPVVWLADLTGDVVCSTAMLRFINLLFNCGNLYLLYLLISKLHSREKMRSTSRRVLSALSLSTFPVLYFFNFLYYTDAGSTFFVLFTYLMTLYGCHKAAALLGVCSVLFRQTNIIWVAFCAGTLVATKMDEAWRTEHSKKREEKSPPTQIPLSLSGVRRLMIFMLEFFSSAYHMKAVLQVAWPYAAVALGFLGFVVLNDGIVVGDRSSHEACLHFSQLFYFFSFSLFFSLPVSLCYQRVMRFLQALKKQPLFFLCVTTVSLLMVWKFTFVHKYLLADNRHYPFYVWKNVFQRHELVRYLLVPVYTFAWWNFADSFKSRSLFWSQAFLVCLLVATVPQKLLEFRYFIVPYLMYRL | |||||||||||||||||||
1 | 6p25A | 0.14 | 0.10 | 0.70 | 0.83 | DEthreader | PSVVFDEVHFGGFASQY--IRGTYF-M-DVHPPLAKMLYAGVASLGGF------PSTTPYVLMRFFSASLGALTVILMYMTLRYSGVR----MW-VALMSAICFAVENSYVTISRYILLDAPLMFFIAAAVYSFKKYSLLATGIALGMASSSKWVGLFTVTWVGLLCIWRLWFMIGD-L-TK-----------------------------SSKSIFKVAFAKLAFLLGVPFAYLIKFIESHKKM--WHINKNLV---SQPTSWPFLWWAVTAFIGIFGLIVITE-FS--------------------------------------------------------------------NFHVQVIHYLLGFAVHYAPSFLMQRQMFLHHYLPAYYFGIL | |||||||||||||
2 | 6p25A | 0.12 | 0.08 | 0.70 | 0.83 | DEthreader | WPSVFDEVHFGGFASQYIRGT-YFM-D--VHPPLAKMLYAGVASLGG--F----QGDFDFTPYVLMRFFSASLGALTVILMYMTLRYGVRMWV--AL-MSAICFAVENSYVTISRYILLDAPLMFFIAAAVYSFKKYSLLATGIALGMASSSKWVGLFTVTWVGLLCIWRLWFMIGD--LTKS-------------------------S-KSIFKVAFAKLAFLLGVPFALYLFFIESHKKMWHINK-NLVEP---ESQP-TSWPFWVTAFIGIFGLIVITELFS-QL--------------------------------------------------------------------HV-VIH--LL-GFAVHYAPSFLMQRQMFLHHYLPAYYFGIL | |||||||||||||
3 | 5ezmA | 0.14 | 0.11 | 0.81 | 1.00 | HHpred | RHLVPDEGRYAEISREMFAGDWVTALKYFEKPPFHMWVTVVGYELF---------G-LGEWQARLAVALSGLLGIGVSMMAARRWFGA------RAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGWMVACWAAMGVAILTKGLVGIALPGLVLVVYT-LVT--RDW-GL-W-RRLH--------------LAL---G-------VVVMLVITVPWFYLNPEFPNFFFIHEHW---QR-------RSGSVFYFLPLVIGGFLPWAGIFPK--LWT-AMRAFRALMAGIWAIAIFVFF--SISRS-K---LPGYIVPALDRLSPRSWG-KQLIGMAIVAACGLLASPLNAHIAVWVAAFVVMLLGIAVARLLLRRGV---------- | |||||||||||||
4 | 6eznF1 | 0.12 | 0.08 | 0.64 | 1.06 | DisCoVER | -SRHEDPWFNYRATKYLVFYKFLNWTGGTLYPGLMTTSAF-IWHALRNWLGL--PIDI-RNVCVLFAPLFSGVTAWATYEFTKEIK------DASAGLLAAGFIAIVPGYISRSGSYDNEAIAITLLMVTFMFWIKMHATCAALFYFYMVSAWGGYVFITNLIPLHVFLLI-------------------------------LMGRY--------SSKLYSAYTTWYAIGTVAS--------MQIPFVGFLPIQP----VSWAFF-FD--TH-FLI---------------------------------------------------------------------------WLFPAGVFLDLKDEHVFVIAYSVLCSYFAG-VMVRLMLTLTPVIC- | |||||||||||||
5 | 3wajA1 | 0.13 | 0.11 | 0.84 | 0.40 | MRFsearch | ----NDPWYYYRLIENTIHNHRIWFDPFTYFGPFLVYLGSIAGIIFSATS-----GESLRAVLAFIPAIGGVLAILPVYLLTREVF------DKRAAVIAAFLIAIVPGQFLQRSINDHHIWEAFWQVSALGTFLLAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFV--------------NADRKNLSLVAVVTFAVSALIYLPFAPFQLLVLLGSAVIAAAFYQIEKWNDV---------LTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFLKSFPEMALLIWAIAMFIALW-----------------------GQNRFAYYFAAVSAVYSALALSVVFDKLHFRVAFALLIALAAIYPTYILADQWYDALTWMREN- | |||||||||||||
6 | 5ezmA | 0.09 | 0.08 | 0.87 | 1.28 | SPARKS-K | MRHLVDEGRYAEISREMFASG-DWVTIRYNKPPFHMWVTVVGYELFGL----------GEWQARLAVALSGLLGIGVSMMAARRWFGA------RAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGWMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVFYLVSVRFFFIHEHWQRRSGSVFYFLPLVIGGFLPWAGIFPKLWTAMRPALMAGIWAIAIFVFFSI---------------SRSKLP---GYIVPVIPALGILAGVALDRLRSWGKQLIGMAIVAACGLLASPVVATLNANHIP--------------NSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHE--TVGRPASGAD | |||||||||||||
7 | 6p25B2 | 0.09 | 0.08 | 0.85 | 1.05 | MAPalign | --VVWDEAHFGKFGSYYLRHE---FY-HDVHPPLGKMLVGLSGYLA-------GYNGSDFVKMRLFNASFSALCVPLAYFTAKA-----IGFSLPTVWLMTVLVLFENSYSTLGRFILLDSMLLFFTVASFFSFVMFWLLITGISLGCTISVKMVGLFIITMVGI-YTVIDLWTFL---------------------------ADKSMSWKTYINHWLARIFGLIVPFCIFLLCFKIHFDHLNLAMTNNALVPLASSAWQWPPASTWASSVAVLAFM--ATVVILLIRWQRQYVDLNPSNWNVFLMGGFY----------PLLAWGLHYMPFVITYVHHYLPALYFALIILAYCFDAWS-RSKCGRIMRFVLYAGFMA-LVIGCFWYFSPISFGMEG | |||||||||||||
8 | 6p25A2 | 0.09 | 0.08 | 0.91 | 0.85 | CEthreader | DSVVFDEVHFGGFASQYIRGTYFMDVHPPLAKMLYAGVASLGGFQGDFDFENIFPSTTPYVLMRFFSASLGALTVILMYMTLRYSGVRM-----WVALMSAICFAVENSYVTISRYILLDAPLMFFIAAAVYSFKKYELLATGIALGMASSSKWVGLFTVTWVGLLCIWRLWFMIGDLTKS-------------------------------SKSIFKVAFAKLAFLLGVPFALYLVFFYIHFQSLTLDGDGASFFSPEFRSTLKNNYKPASFISKFIESHKKMWHINKNLVEPHVYESQPTSWPFLLRGISYWGENNRNVYLLGNAIVWWAVTAVITELFSWQLGKPILKDSKVVNFHVQVIHYLLGFAVHYAPSFLMQRQMFLHHYLPAYYFGIL | |||||||||||||
9 | 6eznF1 | 0.13 | 0.11 | 0.84 | 0.89 | MUSTER | FESIIDPWFNYRATKYLVNNSLNWFDDRTTLYPGLMTTSAFIWHALRNWLGLPIDI---RNVCVLFAPLFSGVTAWATYEFTKEIK------DASAGLLAAGFIAIVPGYISRSVAYDNEAIAITLLMVTFMFWIK-HATCAALFYFYMVSAWGGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIMQIPFVGFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKF--------------KVIMQPVS-------WPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMV----------R---------------LMLTLTPVICVSAAVALSKIFDIYLALLAKLIVSGSFIFYL------YLFVFHSTWVTRT | |||||||||||||
10 | 6p25A2 | 0.11 | 0.09 | 0.84 | 1.67 | HHsearch | DSVVFDEVHFGGFASQYIRGTY-FMD---VHPPLAKMLYAGVASLG----GFQGDFTTPYVLMRFFSASLGALTVILMYMTLRYSGVR-----MWVALMSAICFAVENSYVTISRYILLDAPLMFFIAAAVYSFKKYSLLATGIALGMASSSKWVGLFTVTWVGLLCIWRLWFMIGDLTKS-S-----------------KSIFK---------VAFAKAFLLGVPFALYLVFFYIHFQSLTLDGDGAVEPHVYESGNAIVWWAVTAFIGIFGLIVITE-----LFSWQLFHVQVIHYLLGFAVHYAPSFLMQRQ---MFLHHY--------L---P----AYYFGILALGHALDIIVSRSKRQMYAVVITFLAASVYFFKSFSPIIYGTQKSQWLY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |