>PF04913 (457 residues) KYLFLTSYFDLKDNEHVPSEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGST STNIFKFVKPQFRFVCDRTTVDILEFDTRMYIKPGTPVYATNLFTSNPRKMMAFLYAEFG KVFKNKIFVNINNYGCVLAGSAGFLFDDAYVDWNGVRMCAAPRLDNNMHPFRLYLLGEDM AKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKSKYTVVNSTKIVTRKPNDIF NEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDLLNEYMTKSSIMKIITKFVIEENPAMS GEMSREIILDRYSVDNYRKLYIKMEITNQFPVMYDHESSYIFVSKDFLQLKGTMNAFYAP KQRILSILAVNRLFGATETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSN TVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KYLFLTSYFDLKDNEHVPSEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKPQFRFVCDRTTVDILEFDTRMYIKPGTPVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLAGSAGFLFDDAYVDWNGVRMCAAPRLDNNMHPFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKSKYTVVNSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDLLNEYMTKSSIMKIITKFVIEENPAMSGEMSREIILDRYSVDNYRKLYIKMEITNQFPVMYDHESSYIFVSKDFLQLKGTMNAFYAPKQRILSILAVNRLFGATETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLI | |||||||||||||||||||
1 | 2exiA | 0.06 | 0.04 | 0.69 | 0.67 | DisCoVER | LTGFHPGP------------------------------------S--ICRVGDDYYIA------V-ST----FEWFPGVRIARPLNLSQLNMIGNPDSGG-------V---WAPHLSY------SDGKFWLIYTDVKVVGQWKDGHNYLVTC-DTIDAWSDPI------YLNSSGF------------DPSLFH--DEDGRKYLVNMYWDHRVDHHPFYGIVLQEYSV-----------------VGEPKIIFKGTDLRITEG------------------------PHLYKIN------GYYYLLTAEGGT-R--YNHAATIARSTSLYGPYEVHNPLLTSWPLQKAGHASLVHLTGRCPLGRETAIQYVNGPSLHFQTLRIPETKVSFRPFQSAGLVNTTLQITWHKGRILELMTCDHLVDQPLREIVVPIEYVYLRVYSFDSRA--AFT--GA- | |||||||||||||
2 | 6f2pA | 0.07 | 0.05 | 0.66 | 0.67 | DEthreader | ---------------A-LISALLPYVAGFYNDG-SFV-QHTYYAY--N----G-GYGSELLSGIAD---------------KNNV----YRWIY-DSYEPFIYKGNLDKAAVTVMAS-----------QTAASADA-------FKRMVKYW--------LIIAANLVNTSRELKYKQFSGMDRFSSRIGN-YESINAENNKG--------YLYNTDLQFNDHFTVRLPGTT-SRSDKSELHTAKGIASTIATETIVE---------PGSDIGYYFGRRNFMTLW---FDHG--MN------PTNGSYSYVLLP-YPQISILENS--S-------S--A-QAVKETQLNVT------GINFWNDE----TVGLVTSNRVMTKETDFEISVSD-NGTINEITVFKVNVNNSGGKSYKVKFSLT----------NAEFSLD------------------- | |||||||||||||
3 | 4iglB | 0.09 | 0.09 | 1.00 | 0.70 | CEthreader | IYTQSVDAGNTLVLNDTEGRSVIAMTNISRENGKDDLSLAVTRTFQYENAPLPGRPLSVTEQVNGENARITEHFVYAGAGQCVSYYDAAGLIQTGKPLSVSRKLLKNLDDTNILADWQGNDTSAWNSLLATEIYTTVTRIDAVGNQQRVAFDIAGQLSASWLTLKGGQEQVIIKVLTYSAAGQKLREEGGNGVVTTYTYEAETQRLIGIKTERPGAKVLQDLRYEYDPVGNVLSITNDAVPENAYRYDSLYQLVSASGREVAGAGQQGSDLPSPLVPLPSDSSVYTNYTRTYTYDSAGNLMRIRHSAPATNNNYTLNITVSERSNRGVMSSLTENPADVDALFTASGSQKCLQQGQSLIGELRTVLLVARGETADDSESYRYDGSSQRILKISSQQTSARVQRALYLPGLEWRTMTGAENLQVICIGEAQVRVLHWESGKPDGIINDQIRWSYDNLT | |||||||||||||
4 | 4mz0A | 0.06 | 0.05 | 0.91 | 0.78 | EigenThreader | ----------------LKQEQEKEQSLSALQRALIALKDARSKLEKYETQSKEPSCRFPGGVDLLNDGVDAISEVYYDPDPD-----ATG---KISTRDGGFLSQDPQQRLLLEVSWEAIERANISLTGV-----FIGIGPNLAVETACSSSLVSLHLACQSLRQQECNLAAGGVNLLETSIIFSQAKMLSPDGRCKTFDASVRGEGCGVIVSDAVANGDNVLAVIGTAINQDGASVAVIRKALSNGGVDPASVSYIEAHGTGTSLGDPIEVGAIGTVFGKLMKVVLQLQHQNWSQLPQTNGKSRIAGVSSFGSGTNAHVVIEEAPKERAPELRRSHFNNRLAV---VASNQQELVEKEVTGIYSIELPNNSTAPKIALLFTGQGSQYVMGHSQLP---AGGEMVVIASKVAIAAINGPE--STVISGEAVSHAFHSRLMEPMLAEFEAVAKQ---V | |||||||||||||
5 | 1odzA | 0.10 | 0.05 | 0.52 | 0.36 | HHpred | --AVYGWDTLSIVAPKAEGDIVAQVKKAFDNAVVDSLNGYLDQVAEWANNLKDEQ--GR--------LIPIFRLYH--------ENTGSWFWW-GDK----Q---STPEQYK-QLFRYSVEYLRDVKGVR--NFLYAYSPNNFRYPGDEWVDVLGFDTYGPVADN---ADWF-RNVVANLVARMAGKIPVISGI------------GIRADIEAG-----------------LYDNQWYRK-LISGLKADAREIALVWRNAPQGHYANRGTLEDFQAFYADEF---TAFN----RDIEQVYQRPTLIV----------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 4tpsA | 0.10 | 0.02 | 0.23 | 0.45 | MRFsearch | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------HYYTYLIKEEFANHYFG------------------------------------------------RESVMFELFQDYH-WTSLEKQQYE--------MTEKQIQYITQPIPILHMHQRLKMNL------DYRQLDYIYRIALPKAKGHATFMMKE--------------HMIEIVACFLAMD---------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 3apoA | 0.12 | 0.11 | 0.90 | 0.49 | FFAS-3D | ------FIFRSGMADRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITEDCLTSQTRLRLSGM---LDGLVNVGWVDCDAQDSLTTAYFPPGATLNDREKSAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVF--FHFGNDPEGICS--DLYVFQPSLAVFKGQYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAP----------------WSPPSRALLPELRKASTLLYGQLKVGT----LDCTIHEGLCNMYNEYHSAEQILEFIEDLRNPSELVKQRKHDEVWMVDFYSPGLINVGSVDCGQYHSFCENVQRYPEIRFYPQASIDLTPQNEKVLQGKTHWVVDFYAPWSGPSQNFAP--EFELLARMIKGKVRA----GKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSNSRDAKTIAALIYGKL----- | |||||||||||||
8 | 4on1A | 0.11 | 0.07 | 0.68 | 0.58 | SPARKS-K | ------------------------PQLEHVLNLRSMD---YEDLAGVLSKISIMLQEGSELWTTSIKAIHGVEIEESNRPVYLFEGQDKAILSQSYATIRLQYIVYKDKERMAEIANYYQNHYLDKIVVCNTG---------------------------------DIKNIRIDI------TKAIGNNPFKGLPIKDYPTEATYPALEFMLIEKDGGS------------LETSQIQAVTTSLKFLIDSGFITVKYTIKDSSHKGGASDYEVSALESFQNYLRSW-----------DEVKGQDKKPYILLRDGTDSGKTFGYASGIGVIHLNNPRGNFEVA------------AISTTSSSHPYTLAHEIGHLLGAEHV---------------------------DNEQDLMYTW-------------YSPQVTPNHLS-ADNWVRMLECIQK--- | |||||||||||||
9 | 6oq5A | 0.13 | 0.09 | 0.70 | 0.95 | CNFpred | NRVFAWETGWTPGLRSL--------------------ENDGTKLLDRIRDNY---------EFYWRYFAFIADALITTLKPRYEDTNIRINLDSNTRSFIVPIIT--TEYIREKL------------------SYSFYGGTYALSLS---QYNMGINIELSE------SDVWIIDVDNVVRDVTIE-----------------SDKIKKGDLIEGITLSIEEKIILNSHEINFSG----------EVNGSNGFVSLTFSIL------------------------------------------GINAIIEVDLLSKSYKLLISGELKIL-IGFNSELQKNIPYS----FVDGKENGFINGSTKEGLFVSELPDVVLISKVYMDPSFGYYSNNL------KDVKVITKDNVNILTGYYLKDDIKISLSLTLQDEKTIKLNSV-HLDESGVAEILKFMN | |||||||||||||
10 | 1bxrA | 0.05 | 0.03 | 0.65 | 0.67 | DEthreader | LGAFSGAQACKALRE-EGYRVILVNTIMTDPTYIEPVVRIIEPDAVLPT---MGGQTALNCALEL------TMGGSGGILIKEYECSIENFDMGIHTGDRSALKATIYVVIGTESLQKALRGE-GATG---------FDPKV------------------IRRELKDAGADRIW----AR--A---LHPVYKRVD-AAEFATTAYMYLGGGNGIEFYCVHASLALIQYGPLKLARA-IDRAEDRERFQNALVVRPSYV---------------------------LGGRAMEIVEADLRYFLDFLAEVDVDAICMVIGIMEHQAGVHSGDSAC---SLPALQQDVMRQQQFAVKNNEV---------------IPP-----TFA---------------------ERVVDL-------------------IVLGEAG-------S------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |