>PF04890 (290 residues) LNSVTFTPTYSPSRVEKLSAVLDSYFYLQGKKTKVIDKSTELGLRFAVQHQGHSVPTTEK VLKVLSWIFIPIVIVAWILRQALHLYLHIAYPCVYLDTPLPEALQKDVFTTCQKISRTLN SSTILTMPEEKYQELKAEGISIEKPKGEFSTALPVRFYLDSRKSHTFYLLGQRDQFDTHC LDLYHLIQKGKNLISEFELTGKNDKKSIEKLLRTRLGIAAKITNLPNQNQQALYRGLKAE FYFDNYPSYVCSLEDNTISLHDVAGSYQDEFKEVDVARFVRNVLEARHLE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LNSVTFTPTYSPSRVEKLSAVLDSYFYLQGKKTKVIDKSTELGLRFAVQHQGHSVPTTEKVLKVLSWIFIPIVIVAWILRQALHLYLHIAYPCVYLDTPLPEALQKDVFTTCQKISRTLNSSTILTMPEEKYQELKAEGISIEKPKGEFSTALPVRFYLDSRKSHTFYLLGQRDQFDTHCLDLYHLIQKGKNLISEFELTGKNDKKSIEKLLRTRLGIAAKITNLPNQNQQALYRGLKAEFYFDNYPSYVCSLEDNTISLHDVAGSYQDEFKEVDVARFVRNVLEARHLE | |||||||||||||||||||
1 | 5me4A | 0.10 | 0.08 | 0.75 | 0.74 | DisCoVER | LRFAIAPMRP---TPSQTIKEFEIFKYLLGATYEIVSPESWAAISVAMTGHVDVGWLGPWGYVLSNKKAGTEV-LA--TVKYPF-YK--ALIVGRADLPIWEDAKGLKL-SL--S--DQ-GNTSGWPPASYFEYR--EGATFGQNESQIQIDLGSDMDRGGQIDPSKSKIVWE--SS-KLP-ND-AI--S--VPKDF------DPALKARIT--EILTSLSEEKAQ----SLMGSGYNGFVKA--------------------------------KHSDYKVIEDAGR-- | |||||||||||||
2 | 3nz4A | 0.08 | 0.06 | 0.71 | 0.67 | DEthreader | ----------SRSHVKDILGLINTFN-------EVKK---------AA---RHDVKVARSLLALSTVMYDANVLLLLVETLCGMFCEGREEFAHP--LIHKVKPHPGQIESAE-LLE-----WLLRSSPFQDLSREY----Y-SIDKLK-KPKQDR--------YAL-R------S--SPQWLAPLVQTIRDATTTVGS-VGFYMDYVRIAVAG-GKLLFAF-----YGLKGLDIAMAAYSELLKTDEDIMIHLAMCFYFVLVQKVFDAIADG--T-------------- | |||||||||||||
3 | 1hj5A2 | 0.09 | 0.09 | 0.99 | 0.62 | CEthreader | IALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKYAIAGAYWPPQYVIMEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLDNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW--ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD | |||||||||||||
4 | 3qr0A | 0.06 | 0.06 | 0.98 | 0.60 | EigenThreader | AYAKYAKPPKDKKIKEAGTNFDKCVTICYIDLTHLVAENSSVAKKWSEEVFSYAYNLLSLNKNQLGEWEKLYFRLTTVGIFKELSVMFRDFLNDMQRLYTDAQCEALINDYESAVNKKGKKKGQLT--KEGLLYFLMCEENNINSSHNTYLTGHQLDCWDGKDGEPIITHTMCTEVLFKDVVYAIAESAPVILSFENHCSVAQQKLLAQYCNEAFGELLILIKNKKAEAAEEMSALVNYIQPVHFTTYEMSS-----MVETQALNKLKDNPEDFVDYNKKAMCVNLGVFE | |||||||||||||
5 | 3g5aB | 0.16 | 0.10 | 0.62 | 0.35 | HHpred | ---------------NLTSSYLQIADSIIAQAINLINETFPWSGEISFSYNGGKDCQ----------------VLLLLYLSCLWEYYITKLPTVFIDHDDTF---KTLENFIEETSLRYSLSLYESDRAEAFETFLQVF-----------------------PETKAIVIGIRHLLHWNLANIWSFLLYSN--EPICELYRY---------GFTSLGNV--EETLPNPH-------LRKDLHEDYYPGWY--LVDDKL-------------------------------- | |||||||||||||
6 | 4p8qA | 0.14 | 0.11 | 0.82 | 0.50 | MRFsearch | ------------LSDKDRANLINNIFELAGPLKRAFD------LINYLGNE-NHTAPITEALFQTDLIYNLLRLVTRVFKLLQNQIQQQTWTD------EGTPSMRELRSALLEFACTHNLGNCSTTAMKLFDDWMASNGTQS---------LPTDVMT------TVFKVGA--KTDKGWSFLLGKYISKNKILEALA--SSEDVRKLYWLMKSSL---------RTQKLSFIIRTVGWDFVKENWNKLVQKFPLGSYTIQNIVAGTKTHLSEVFRLRCVQEALEVIQLN | |||||||||||||
7 | 6yttA1 | 0.12 | 0.10 | 0.80 | 0.53 | FFAS-3D | ------------QALAAAEGIVKQAVDEKGRDYKVAFPDTAYSLPVIFAATGKKITNVGELEGALDIVLLNSGLATAVAAEIIEAAKYVLSDAPYAEPFISDPIIRSLGVPLAKIIKDYQSKGLLTCLVGVIDQAIEGKVKM-------------------GLDLRVIPLGYDVTSVIHVVTIAIRAAL------IFGGIKGGQLNDILKYTAERVPAFVNAFGPLSELVVSAGAGAIALGFVPEVPTLLLTQKD--------------------YDKMVKTSLEARNI- | |||||||||||||
8 | 7aavA | 0.11 | 0.10 | 0.94 | 0.46 | SPARKS-K | LFPPWIKPADTEPPPLLVYKWCQGINNLQD----VWETSEGECNVMLESRFEKMYEKID--LTLLNRLLRLIVDH----NIADYMTAKNNVVINYKDLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQM------PNDFLSFQDIATEAAHPIRLFCRYI-DRIHIFFRFTADEARDLIQRYLTEHPDNENIVGYNNKKCWPRDARKHDVNLGRAVFWDIKNLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIRTSYEEFTHKVDDESMQRFHNRVRQILMAS | |||||||||||||
9 | 2jg4A | 0.12 | 0.09 | 0.75 | 0.69 | CNFpred | -------------YLELLKDSLNEYAYAAEGLSYDLQNT-IYGMYLSVKGY---NDKQPILLKKIIEKMATFEIRFEIIKEAYMRSLNNFRAE---------QPHQHAMYYLRLLMTEV-----AWTKDELKEALD--DVTLP-RLKAFIPQLLSRLHI------EALLHGNIT-----KQAALGIM------------------QMVEDTLIEHAHTKPLLPSLVRYREVQLPDRGWFVYQQRNHNNCGIEIY---YQTDMQ------STSENMFLELFCQIISEPCFN | |||||||||||||
10 | 6bq1A | 0.06 | 0.04 | 0.71 | 0.83 | DEthreader | ------------G--G---GG-GGGGGGGGGGGGGGGGGGGGG-GG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGMVIAVADKVFDAFLNMMADKAK-------------------------TKENEEELRHAFLFHHKRIRVADLVLLSGTVLKTMLDILQTLS--L-SLS---ADIHKDQP--YY-DIPDAPYRITVPDT-Y---E--AR-ESI----------VKD---FAARCGMILQEAMKWAP-YS-HAKTAMFSDKKMRT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |