>PF04887 (196 residues) CPPRQDYRYWYFAAELTIGVNYDINSTIIGECHMSESYIDRNANIVLTGYGLEINMTIMD TDQRFVAAAEGVGKDNKLSVLLFTTQRLDKVHHNISVTITCMEMNCGTTKYDSDLPESIH KSSSCDITINGSCVTCVNLETDPTKINPHYLHPKDKYLYHNSEYSMRGSYGVTFIDELNQ CLLDIKKLSYDICYRE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | CPPRQDYRYWYFAAELTIGVNYDINSTIIGECHMSESYIDRNANIVLTGYGLEINMTIMDTDQRFVAAAEGVGKDNKLSVLLFTTQRLDKVHHNISVTITCMEMNCGTTKYDSDLPESIHKSSSCDITINGSCVTCVNLETDPTKINPHYLHPKDKYLYHNSEYSMRGSYGVTFIDELNQCLLDIKKLSYDICYRE | |||||||||||||||||||
1 | 3on9A | 0.13 | 0.10 | 0.76 | 1.13 | DisCoVER | ------GSFNSIDVEINMYP-V-N----KTSCNSSI-----GSSSTISTSELTITLTHEDC-TPVFIGDYYSVVKLATSGFFTNDVHQDLTQCKINLEIKCNQLTPTTK--------VYLMPHSETVTVVCLSNLDVYI-VYA--N-TDAIYS-----------------DMDVVAYHTSYILNVDHIPPNDCER- | |||||||||||||
2 | 2vgaA | 0.08 | 0.06 | 0.76 | 1.29 | MAPalign | -------EYMGIEVYVEATLDEPL---RQTTCESKIHK----YGASVSNGGLNISVDLLNCFLNFHTVGVYTN-RDTVYAKFASNMVKLTEECIVDIYLKCEVNGNRLKPRDFKTVPPSNVGSMIELQSDYCVDVTTYVKIYDECGNIKQHS--------------------------------IPTLRDYFTTK- | |||||||||||||
3 | 2vgaA | 0.08 | 0.07 | 0.87 | 1.20 | CEthreader | -CDSDNKEYMGIEVYVEATLDEPLRQTT---CESKIHK----YGASVSNGGLNISVDLLNCFLNFHTVGVYTN-RDTVYAKFASLDPWTTEPCIVDIYLKCEVDKTKDFMKTNGNRLKPRNVGSMIELQSDYCVNDVTTYVKIYD-ECGNIKQHSIPTLRDYFTTKNGQPRKILKKKFDNC--------------- | |||||||||||||
4 | 4hkjD | 0.09 | 0.07 | 0.74 | 0.83 | DEthreader | -RCEKEEETWKLKIG-CIQAKFYS--KR--TDCSVHRPD--GGGLITEGNGYRVVVHDCNPFI-IATTKQTHFGVTHSYIEFSNSNTGAPEIDSKILISVYCSGLD---FH-T-LK-YV-ESNYLHITVKYTIHLGVNYSFNECERKLTSIYETDT---------------------------DIQTR-------- | |||||||||||||
5 | 3rkoN | 0.06 | 0.05 | 0.79 | 0.83 | DEthreader | ---------------------------QNLLPLIVTVVHFATSVGLALLVMLGVLSTCAWLYKEFLVILGLLANHSLGIISPLLGYAFRQSGAAVSFTAIAFG----AAFSIIFGLMA-QNKRLLG-SHLLMVGVYLYSSAFV-DSLFSYLLAAVMMMLSIPMT-LYLAV-ALVLVLGVPPLISIVRLAM------ | |||||||||||||
6 | 3on9A | 0.16 | 0.12 | 0.77 | 0.43 | HHpred | -------SFNSIDVEINM---YPVN---KTSCN-----SSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVD-KLATSGFFTNDKV--HQDKINLEIKCNSGRES-----RQLTPTYLMPHSETVTVVGDCLSNLDVYIVYANTDIYSDMDVVAYHTSYIL-N-------VDHIPPNDCERD------------ | |||||||||||||
7 | 3on9A | 0.17 | 0.10 | 0.58 | 0.57 | MRFsearch | ---------NSIDVEINMYPV------NKTSCNSSI-----GSSSTISTSELTITLTHEDCTPVFIGDYYSVV-DKLATSGFFTNDKVHQTQCKINLEIKCNSG---------RESRQLTMPHSETVTVVGDCLSNLDVYIVYA---------------------------------------------------- | |||||||||||||
8 | 3on9A | 0.15 | 0.12 | 0.79 | 0.76 | SPARKS-K | ------GSFNSIDVEINMYVN-------KTSCN-----SSIGSSSTISTSELTITLTHEDCTPVFIGDYYSVVD-KLATSGFFTNDKVLTTQCKINLEIKCNSGR-ESRQLTPT-TKVYLMPHSETVTVVGDCLSNLDVYIYANTDAIYSDMDVVAYHTSYI--------------------LNVDHIPPNDCERD | |||||||||||||
9 | 3on9A | 0.14 | 0.10 | 0.72 | 1.18 | MAPalign | -------SFNSIDVEINMYP---V---NKTSCNSSI-----GSSSTISTSELTITLTHEDCTPVFIGDYYSV-VDKLATSGFFTVHQDLTTQCKINLEIKCNSGRE--SRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSD---------------------------------MDVVAYHTSYI | |||||||||||||
10 | 3on9A | 0.09 | 0.08 | 0.82 | 0.92 | CEthreader | --------GSFNSIDVEINMY----PVNKTSCNSSIG-----SSSTISTSELTITLTHEDCTPVFIGDYYSVVDKLATSGFFTNDKVHQDLTTQCKINLEIKCNSGRESRQLTPTTKVYLMPHSETVTVVGDCLSNLDVYIVYANTDAIYSDMDVVAYHTSYILNVDHIPPNDCERD------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |