>PF04870 (343 residues) PFATITKHLTNTVKVLKKKDELSKWQDIIERIQNESSLMKKRKEMEMLQRKRLRVFQEAK RIKSSESRSVESRNQRKQDELKIMNFETIEKEIEDEELKEMFHQKASNMSEEEKMMLVPI DLIRHAAKIGLGLAGHNTTDMDKKTLKLISPRFMSVLPDKTEVKNKTVDVLSPSLFSLHN SGSELEKATSLKSLLGSGMTAQDSQNFLDLLVEATGVAEAVEDAEQKLIDAQRQKDDAMG RGPDGQPLYFTKENITERFPSEAKKIELFEQLDKTYSLEQLKDMNQTGYTMLTPKQMQML YGKKSPFKNPKLLKTYNNMTRAEIHRAIHSTIRNIADEKLKFE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PFATITKHLTNTVKVLKKKDELSKWQDIIERIQNESSLMKKRKEMEMLQRKRLRVFQEAKRIKSSESRSVESRNQRKQDELKIMNFETIEKEIEDEELKEMFHQKASNMSEEEKMMLVPIDLIRHAAKIGLGLAGHNTTDMDKKTLKLISPRFMSVLPDKTEVKNKTVDVLSPSLFSLHNSGSELEKATSLKSLLGSGMTAQDSQNFLDLLVEATGVAEAVEDAEQKLIDAQRQKDDAMGRGPDGQPLYFTKENITERFPSEAKKIELFEQLDKTYSLEQLKDMNQTGYTMLTPKQMQMLYGKKSPFKNPKLLKTYNNMTRAEIHRAIHSTIRNIADEKLKFE | |||||||||||||||||||
1 | 2w6dA | 0.07 | 0.06 | 0.80 | 0.84 | DisCoVER | RLL-VL--GDMKR--GK------ST--FL-NA--LI-GETA--VLT-VLR-YGPEKKVTI----HFNDGKSPQQLDFQNFKYKY-TIQAFPDVDY--AV--V------------EYLLQKGIEIVDS-PGLNYVNN------CHAILFVMRASPCER---IKGRGLTVFFLVNAWDQVRDPDDVEELSEVFNANLAEYCTVEGQNIYDERV-FELSSIQALRRRLKNPQADLDGTGFLNDFLSSGKAFNALQKAFEQINAFKELSRSASQYGASYNQITDQITEKLTGKDVSPGWAKWAMGLLLAGFAAGAGFDWKNIL------NAVKECFDSY-------- | |||||||||||||
2 | 7kdsA | 0.04 | 0.03 | 0.72 | 0.67 | DEthreader | VKLR-ETP-KE-FFERQPNKGIHDVNQYKQMYEQSPGFFGPAFWFLGELNASYNCV--ALICEILTYGDLREVSKVAGALAIARLGA--YLPP----V--SV-NS-------VHSTAGYLLGAALSTKYIFD----IHPE--DILFTAGWITGTYAIPGFWQIVHAHFYVSVGEPISPDIWEWYNE------------------------LIAPLAVVAYPFFGIDAIKDHW-----------------TVYKNH-TK-------Y--TYMPYYFTG-DGAARDGYYWIRGRV-DDVV-RLSTAEIEAALI-AAVVGIHDDITGQAV----------I----- | |||||||||||||
3 | 5hiuA | 0.06 | 0.06 | 1.00 | 0.52 | CEthreader | PVHAIWHAAKDMIHPENPDNARQASWELLIECVELERSEYFHTLTGPAHSKDFCYQLVALEQLTNHGRNIAMFPLLTLWLNQAYRAARDARKLALARPASPEDKNLSQLFALVKDVIKFKFATDDVIAGLIDMLLKICMLTSVEDDLRACIHVIESLVTFGSIPTNKLKYCIQVLSSIHCLVPSLQKEATISIICRSHHGQSTVRILLDFLRSYSPNPDKNREKDTVRDVRGALSVLQKLLRKTAEKGYPQVPLSLLVGGLANVSKSSSTRVATEILRLINSLFHGNINPILVEEHWEPIFDVAAQCATKAPTVAKENVSLQLKHLILRVENLIVHQGPELLQ | |||||||||||||
4 | 5f0oA | 0.04 | 0.04 | 0.97 | 0.68 | EigenThreader | PVKRLWECLGLVHLTRETRRDLRDECIDAVARIYTESIESFNRRQDQMSTVLWKFIEFCEETNSASLSDTKLIKTVEWISLYRLIKVAVAETSKHLTVRNAVSELFKRLEERVLIYRAAPLKRQLIDNISIIKFKDQVTTLSLAEAMRTVYKISKTFLEDYAKEGNPLEAKYAIKLLGLAPNAAEYLSEVATAILDLKSKHFASNVLVLAEITKMQPQLLEGLLIKDVDIYTG-----KADALSAKVFSLKLFANKIKVMAMFTERTLKLFFYLVAPANYQNKL-----RCCAGLHILKITKIAFIKPQDISKLNLVEDSLEVRSSFIGRLKDFLGDGSISIK | |||||||||||||
5 | 1vt4I | 0.14 | 0.13 | 0.90 | 0.39 | HHpred | --EMVQKFVEEVLR--------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQPYLKLRQALLEKMDFLNLKNCNSPETLQKLLYQIDPNWTRSKLRIHSIQAELRRLLKAWNAFRFKQVTDFATTTHISLDHHSMTLTPDEVK-----------SLLLKYLDCRP----QDLPREVLT-TNPRRLSIIAESIRDGLALTTIIESSLNVLEPAEYRKMFDRLSVFSHIPTILLSLIWFDV--IKSDVMVVVNKLHKYLVEKQLKVKLENEYALHRSIVKTFDSDDLPPYLDQYFGHHLKNIEHPERMRFLEQKIRHDSTAWN--- | |||||||||||||
6 | 6gmhQ | 0.07 | 0.06 | 0.75 | 0.52 | MRFsearch | --DQAFQYYYQATQFA-----SSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAILGSLYAASEDQEKRDIAKGHLKKVTEQYP-------DDVEAWIELAQILEQ------TDIQGALSAYGTATRILQEKVQAD---------------------------------------------VPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTT---------------SYNLARLYEAMCEFHEAEKLYKNILREHNFYEASDWFKEALQGPGQKKFERILKQPSTQSDTYSMLALGNVDREKEKRHQDRALAIYKQV----- | |||||||||||||
7 | 7jg5d | 0.09 | 0.08 | 0.94 | 0.91 | FFAS-3D | -AFIIVKWVVPPVRTLMRNQQ----EAVRAALAESAEAAKKLADADAMHAKALADAAESEKVTEEAKQDSERIAAQLSEQAGSEAERIKAQGAQQIQLMRQQLIRQLRTGLGAEAVNKAAEIVRAVDRFLSELEQMAPSSVVIDLRAASRQSLAALVEKAGGLDADGLTNLADELASVAKLLLSETAL--NKHLAEPTDDSAPKVRLLERLLSWSTESNLIDAVEHTARLALLKRAEI------------EVDEVEEQLFRFGRVLDAEPRLSALLSEGRVALLDKALVNQTAAALLSQTVGLLRGERADEAVIDLAELSDAQRTR-LTEVLSRIYGRPVSV- | |||||||||||||
8 | 5h7cA | 0.13 | 0.11 | 0.83 | 0.71 | SPARKS-K | ---KFNKEQQNAFYEILHLPNEEQRNAFIQSLKDDP--SQSANLLAEAKSLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQS--TDSELVNEIVKQLAEVAKEATDK--------ELVIYIVKILAELAKQSTD-------------------------SELVNEIVKQLAEVAKEATDKELVIILAELAKQSTDSELVNEIVKQLEEVAKLVEHIEKILEELEQQSAFYEILSL------------PNLNE-----EQRNAFIQSLKDSQSANLLAEAKSLNVNQAVKQLAEKAKEKEEVIEIKELAELAKQSTDSELVNEIVKQLAEVAKEATDKE | |||||||||||||
9 | 3vycA | 0.12 | 0.09 | 0.74 | 0.79 | CNFpred | LINKSDLTLVQILKQEW----PQNWPEFIPELIGSSSSSVNV---CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE-----------FEQIFKLCFQVLEQG--------SSSSLIVATLESLLR--------------------YLHWIPY--------RYIYETNILEL-----------LSTKFMTS---PDTRAITLKCLTEVS-IKRQTVLFFQNTLQQIATSVM--------PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDE----LRELLLNAH---------QYLIQLSKIEERELFKTTLDYWHNLVADLFYEP | |||||||||||||
10 | 5a22A | 0.06 | 0.04 | 0.66 | 0.67 | DEthreader | NSSDKSVSLREFVITEYLIKTHV-TMADDLTAVIKK-LD------------------------------------------------------------SRNVVELQGAL--NQMVSNNEKIMTAIKIGTGKLGL-----L--INDDETMQS-------------------LNYGKIPIFR------RGLETKRWSRCTSTNQSTSILQPWE------------RKSTHA-SLDKLSVFLTGPIRELINYFKYQCRLIEKPTGVSHAAALKSSDRPADLLSISFWLSLMEPFNEILFNQLCRTVD--NHL-KWSNLRR-----MIEWINRR-ISKEDRSILML | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |