>PF04841 (416 residues) NTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAVTRDPTKLVPVKGNAR PMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELICIQENATVFVYDMFGREKESYSIGD EASVTKIVEGKVFQSSAGTGVAVMTTSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVT EGRNSYCLLGRDREVIKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLL WLGSVDMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNADRSDFP YDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPASYLFEAQKKFEEKSYK SDEYLSMCREKIDLAVSECIEAASYEFCPETQKSLLRTAYFGKGFIRNHNPDEYMR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAVTRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELICIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMTTSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREVIKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSVDMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNADRSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPASYLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSLLRTAYFGKGFIRNHNPDEYMR | |||||||||||||||||||
1 | 5a9qA | 0.10 | 0.09 | 0.91 | 1.17 | DEthreader | ---LLSVP-NLPEISSIRRVPLPPELVEFNCMMGVFPP--ISRAWLTID----------SDIFMWNYEDGGDLAYFDGLSETILAVGLVKRHLLVLATPVDIVILGLSQLLPDPLSL-PT--DNTYLLTITS-TD--NGRIFLAGKDGCLYEVAYQKINHSKSSLTFSEDDPILQIAIDNSR-NILYTRSEKGVIQVYDLGQGMSASVSQAIVDRSFKIVQIAVIEESCQLLAVT-HAGVRLYFSTLTLVHVRLPTVEKPSKVHRALYSK------GILLMAASDILWCVNHMETQMTAGVDGHSALSADTPKFVLLSQGSLMFHKLRP-VDQLRHLLEIEACATCLILACSDREV-AWATRAFFRYFTSGKHNGICIYFSRIMG-------QELKGLQEFLDRNSQAILVRKSYL | |||||||||||||
2 | 5a9qA | 0.10 | 0.09 | 0.91 | 1.17 | DEthreader | ----LLSVPNLPEISSIRRVPLPPELVEFNCMMGVFP-P-ISRAWLTI---D-------SDIFMWNYEDGGDLAYFDLSETILAVGLVKPRHLLVLATPVDIVILGLSMQLLPDPLSLPT--DNTYLLTITSTD---NGRIFLAGKDGCLYEVA-YQKINHSKSSLSTEDDPILQIAIDNS-RNILYTRSEKGVIQVYDLGQGMSASVSNAIVIDRFKIVQIAVIEESCQLLAVT-HAGVRLYFSTLTLVHVRLPTVEKPSKVHRALYS------KGILLMAASDILWCVNHMMEQMTAGVDGHSWALSAPKKFVLLSQGSLMFHKLR-PVDQLRHLLVEIACTCLILACSTCDRE---WA-RAFFRYFSGKHNGICIYFSRIMG---LESVLQELKGLQEFLDSLQAILVKSYLF | |||||||||||||
3 | 4lg8A | 0.08 | 0.06 | 0.72 | 1.27 | SPARKS-K | EELVKPEELSKYRQVASHVGL-HSASIPG-ILALDLCPDTNKILTGGADK-----------NVVVFDKSEQILATLKGHTKKVTSVVFHPSQLVFSASPDATIRIWSVPASCVQVVRAHESA-----VTGLSLHATGDY-LLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFH-PDGLIFGTGTMDSQIKIWDLKERTNVANFP---GHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFD-----QSGTYLALGGTD-VQIYICKQWTEILHFTEHTGVAFGHHAIASTGMDRSLKFYSL---------------------------------------------------------------------------------------- | |||||||||||||
4 | 5wlcLL | 0.11 | 0.10 | 0.86 | 1.06 | FFAS-3D | --------------------------------QSAYDPSGQYLCYVT--------VALDKQRVGVQPQRWNENFLYLESKLKVTCLKWVNDTVAIILMNNGEIWLYSVANEVTYKFTTGNS---YEIKDIDL----MGNQLWCIDSSDAFYQFDLLQFKLLQHFRINN-CVQLNKLTIVPAGDSVAQLLVASHSISLIDIEEKKVVMT---FPGHVSPVSTLQVITNEFFISGAEGDRFLNVYDIHSGMTKCVLVAES--DIKELSHSGQA----DSIAVTTEDGSLEIFVDSSKKIQIVSKDGYNAFINKDLLNVLQNATMPYFKNLQWREIPNEKHVTGTVTVILSQALQSNDHSNNRDERVIRDTIFRLPALAVILLERLAERIARVWVKWCLI--IHGGYLVSIPNLMSTLS | |||||||||||||
5 | 3mkqA | 0.07 | 0.06 | 0.85 | 1.17 | DEthreader | -----------KLDIKKT-FS-N----RSDRVKGIDFHPEPWVLTTL-----Y------SGRVEIWNYETVEVRSIQVTETPVRAGKFIARNWIIVGSDDFRIRVFNYNTGEKVVDFEA--H--PDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENWALEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPT-----LPIIISGSDGTLKIWNSSTYVEKTLNVGLSCIATHPGNYIASGGFTVLSLGNDPTLPQSLQDDRKNAKDVIVNTN-SN----G-DEA-SGYTLVLYEL-ESITSGK------------TTAT-NRLNYFVGGKTYNLAHYT | |||||||||||||
6 | 4mhcA | 0.11 | 0.10 | 0.90 | 1.17 | DEthreader | ---VGGLG-AFTPFQRQQVTNIPDEVLSVSSDMGIFLE--LNYCWITSD----------NKLILWNINNSSEYHCIDEIEHTILKVKLVKENLLIVATLFDIYILTISNIFNTGLKV-NV--TGFNVSNII-SYERTGQIFFTGATDGVNVWELQYNKICLTKSNL---EETISQLEVDQSR-GVLHTLSTKSIVRSYLIGLVGPVLIDHIRLSNRFKIAKIVSISENLFLAVIT-TTGVRLYFKGLKLDSVKFPSTYINTTCASTIISP------GIYFTCVRHKLYVSAPVENTALLDTTDEIEIVPLRSLVAVLTNALEIYCYRT-PDEVFESLINPLACSTALYLACKKSEH-KSSALAFFSAIKSPRFYGSALLITRLFS-------SSISVLADFFNIHRNALLISIKDL | |||||||||||||
7 | 4mhcA | 0.09 | 0.08 | 0.90 | 1.17 | DEthreader | ----VGGLGAFTPFQRQQVTNIPDEVLSVKSDMGIFL-E-LNYCWITS---D-------NKLILWNINNSSEYHCIDEIEHTILKVKLVKENLLIVATLFDIYILTISLNIFNTGLKVN--VTGFNVSNIISYE--RTGQIFFTGADVNVWELQ-YNKICLTKSN-L-E-ETISQLEVDQS-RGVLHTLSTKSIVRSYLIGLVGPVLIDAHIRLSNFKIAKIVSISENLFLAVIT-TTGVRLYFKGLKLDSVKFPSTYINTTCASTIIS------PGIYFTCVRHKLYVSAPYVETALLDTTDEIKEIVPSLKVAVLTNALEIYCY-RTPDEVFESLIENPACTALYLACKFNKSE---SS-LAFFSAIKPRFYGSALLITRLFS---QEYYLSSISVLADFFNRMNALLISIKLF | |||||||||||||
8 | 2ymuA2 | 0.12 | 0.08 | 0.65 | 1.23 | SPARKS-K | -----------------GSHMGVKERNRLETWGVAFSPDGQTIASASDDK-----------TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGTIASASDDKTVKLWNRNGQLLQTLTGHSSS----VRGVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGH---SSSVWGVAFS-PDDQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH--SSSVRGVAFSPDGQT----IASASDDKTVKLWNRNGQGVAFSPDGQTIASASSDKVKLWN-------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2ynpA | 0.06 | 0.05 | 0.82 | 1.17 | DEthreader | ----------MKLDIKKT-FS-N----RSDRVKGIDFHPEPWVLTTL----YS-------GRVELWNYETVEVRSIQVTETPVRAGKFIARNWIIVGSDFRIRVFNY--NTGEKVVDF-E-AH-PDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPKYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSFAVFHPT-----LPIIISGSEGTLKIWNSSTYKVKTLNVGLESIATHPGNYIASGGFTVLSLGNDEPTL-WSGGAADIFT--ELGSVDV--------------HSPNGRFVT--VV--GDG-------E--YVIYTRNKAFGWSNSYALIDEK | |||||||||||||
10 | 5haxA | 0.10 | 0.09 | 0.91 | 1.17 | DEthreader | -SSDSSW----APFHVVR-HHNIPDKVFLNTKLGLFA--EIGYAWASID----------SSLFLWDYTHPNPELIGYEATHTITAVALVPTHVLVVATTSEIILLGVALTLYSTRMSVH--RG-GSDVSFIVGTK-DGRIFLGGESDTDIHEIFYQRCGKINHSHPFSRQQEWLRGLYVDDTRNLLYSLSNRSTIRTYHMKLTKVIEKDKSCLTDKTNIVALSPIPEALHLMALT-DTGCRLFLSAMQLQFVKFPRALDPSA-LGFRFSP------GYFFDVVRDMLFVSAPYFEGTWIELENRTEIGLTPGEFAVLTTGVHIVRRRR-LVDIFAKALVFRTIAAALVACGRNTEN--RAAFIEYGGQPLSRHDALALYLTRLVR------QENVERLRNFLEAKLHALLMSISEI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |