>PF04817 (230 residues) MSSVINVFASGKSCDSRGAPRSSVRGGHRTGAPRNKPGGTHTPSRRPKGGVHPATTSKDP NKNIRSPPAPTPHKEHRGPAIPGENRGGVHTTRARRRARRSGGMDPRQLTAQPQQRWAET KIPTERRAAIDGLLPPLLNTLDGQIQGNAALLRYCVGAVKRELRRRWKPVQPAHHVAASS GKPSPQLSDEAARNAEDLSRDGEGRAGKSVQQEVLHSGSSVPEVCADCGK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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Seq | MSSVINVFASGKSCDSRGAPRSSVRGGHRTGAPRNKPGGTHTPSRRPKGGVHPATTSKDPNKNIRSPPAPTPHKEHRGPAIPGENRGGVHTTRARRRARRSGGMDPRQLTAQPQQRWAETKIPTERRAAIDGLLPPLLNTLDGQIQGNAALLRYCVGAVKRELRRRWKPVQPAHHVAASSGKPSPQLSDEAARNAEDLSRDGEGRAGKSVQQEVLHSGSSVPEVCADCGK | |||||||||||||||||||
1 | 3pt5A | 0.06 | 0.06 | 0.90 | 0.70 | DisCoVER | YYVLTVNAMAYGEGLPLPDREDAPHPRIKQLARFNPLTHCPHDVQDMTVGQALHIARKLLPDNAGIL--------------IVPCCRGGSAFTAGSEGTYASHDACRWPLYQDLVSRTRAACWMQGEFDLMTDYASHPQHFNHSQLNDAPWFC-GDTT--WYWKENFPAYEAIYGNYQNNILANIIFV--DFGARGLTNAPDEDPYYGSARS-SHF-SSAARRISDRFV- | |||||||||||||
2 | 2ztgA1 | 0.06 | 0.05 | 0.81 | 0.83 | DEthreader | RYPVVAR-RTDIYLT-----SIADFQPFT--------------R-DDLDSVHLTLFEAHH-YCLDTGYGL--------ERFVWAGPTVYIFPEVD--RE----RRIVASSLAGIGELRLRLEGI-VVPLEKVYSLDHTRCILFL-DGLVPYLARLI-RRSLRLAEELELGLDLVEHKKILGFEF-LTVQEILELKERYTTVG---YDSHGIPVELVEPKDYAELAKHSKA | |||||||||||||
3 | 1hj5A | 0.07 | 0.07 | 0.93 | 0.69 | CEthreader | IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST--RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY-----TDLDNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG---------QTPHPGRGANFVHPTFGPVWATSHMGDDSLIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS | |||||||||||||
4 | 4u1dC | 0.05 | 0.05 | 0.97 | 0.63 | EigenThreader | FRPENAIKRADELISVGEALQSLHDFITAATPSTVEPVVFKFLEIGVELKKGKLLKDGLHQYKKLIQGSTEG------LVSVGAVARKFIDLVESKIASEISYRAVLDLLRNNALLNLVDLSDADTLQRYLDQRFQQVDVSVKLEL--WHEAYRSIEDVFHLMKISKRAENLVKVFFVSGDPLLHTTAWKKFYKLYSTNPRATEEEFKTYSSTIFLSAISTQLQSIIEDE | |||||||||||||
5 | 3jctC | 0.16 | 0.11 | 0.69 | 0.33 | HHpred | -RPQVTVHSLTVNKNKRQAYAVSEKAGHQTS---AESWG-------------------------------------TGRAIPRVGGGGTGRSGQGAFMCRG---GRMFAPTKTWRKWNVKVNHNEKRYATASAIAATATDLE--SIQKTKEAVAALKAVKGKYRNRTQGPLVVYA---ED--------NGIVKALRNVPGV-----------ETANASLNLLQLAP---- | |||||||||||||
6 | 2pffB | 0.13 | 0.07 | 0.55 | 0.78 | MRFsearch | ------------GFKQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----GMDLYKTSKAAQDVWNRADN--------------------------------------------------------------------------------------- | |||||||||||||
7 | 2xd8A | 0.10 | 0.09 | 0.90 | 0.47 | FFAS-3D | MANANRSNLSTGTGYGGATDKYALQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDLLISSAFVYDLDETLAHYELRGE-----------ISKKIGYALAEKYDRLIFRSITRGARSASPTASALVNAFYDAAAAMDEKGVSSQGRCAVLNP--RQYYALIQDIGSNGVNRDVQGSALQSGNGVIEI--AGIHI--------- | |||||||||||||
8 | 3a8nA | 0.05 | 0.05 | 0.94 | 0.90 | SPARKS-K | VKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDSVP---KHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTLRLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKILDQIFVWEQNLEQFQMDLFRFRLASLQGGELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAART----------- | |||||||||||||
9 | 2p32A | 0.14 | 0.03 | 0.21 | 0.44 | CNFpred | ----------------------------------------------------------------------------------------------------------------------KDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPII--------------------------------------------------------------- | |||||||||||||
10 | 6rutB1 | 0.06 | 0.05 | 0.83 | 0.83 | DEthreader | -----------N-TQRLQKDSP---VK----QPLKHKNSSGEVKLEAEEFLQTTFFRHPEEAGKFTN----LNQTNGLKLPM-TLTM-GDTATVPRL-YGQPDIPVGWLDGYFLNNPSGLWLFNKLT-T-LDSSTFDQFDFLFSNSPSTPLPTFSNGAPTSDWALTFTNKPQR-QLLRSLGTIP--V---LI-N-KSGD--QFNKSEQKWTGNLPGFEVLYNALTYGFGN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |