>PF04808 (209 residues) MDDTSGQTFISVNLSDESNTASTEIKTVSSEADRLEFLRKMNPFIIDALIRKNSYQGARF RARIIGVCVDCGRKHDKASRTERKCKVNNTQSQNEVAHMLMHDPVKYLNKRKARAFSNAE MFAIDLVMYTKERQLAVDLAAEREKTRLARRHPMRSPEETPEHYKFGMTAKAMLPDINAV DVGDNEDTSSEYPVSLSVSGGVLREHHFI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MDDTSGQTFISVNLSDESNTASTEIKTVSSEADRLEFLRKMNPFIIDALIRKNSYQGARFRARIIGVCVDCGRKHDKASRTERKCKVNNTQSQNEVAHMLMHDPVKYLNKRKARAFSNAEMFAIDLVMYTKERQLAVDLAAEREKTRLARRHPMRSPEETPEHYKFGMTAKAMLPDINAVDVGDNEDTSSEYPVSLSVSGGVLREHHFI | |||||||||||||||||||
1 | 3seeA | 0.05 | 0.03 | 0.69 | 0.57 | DisCoVER | IKNEKFGVTTIAWEQTAKYPNAKIDNSGAEKNTSWYKA--FLGQRITDGL-------EKGIYVLTFYAKAKEA-G--TPVSVYIKQTN-GKLNTTFFRRDYASGA-QYN-FKIKDADKWTKVVVYYDGQVVD-AILK-DC--Y----------------------VAILG---------QNKG--------GVVEISDVTLKK------ | |||||||||||||
2 | 3crlB | 0.04 | 0.03 | 0.71 | 0.83 | DEthreader | --FSK---SPSPL-------------------------------S-MKQFLDFGSSNACESFLELRLIMEINLLVLSPVQQSWYVQSLLIMEFFDALVTIRNRHND-VVPTMAGLFYLSRSIRLINHIFSAPKHSIDCVYVPHLYLMVSIKMSDGLAYGLPISRLYAKYFQGLKALSTDS-V-------------ERLPV--------- | |||||||||||||
3 | 1vt4I3 | 0.04 | 0.04 | 1.00 | 0.59 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 1qe0A | 0.08 | 0.07 | 0.94 | 0.65 | EigenThreader | MQGNQPIKLYYNGMFRYYRQFNQFGVEAIGASVDAEVLA-----MVMHIYQSFGLKH--LKLVINSVGSRKEYRLDPMRILAPRITDFLNEESKAYYEQVKAYLDDLGI--PYTEDPNLVHTAFELMMDNPNRLLLALEEEDQADRYAVKLLNHLRHNGIKKIKGQMKQADRL--GAKFTIVIGDQELENNK--IDVKNMIELDALVEY | |||||||||||||
5 | 2kdxA | 0.09 | 0.03 | 0.33 | 0.35 | HHpred | -------ERVVVGIGE--------RSA--MDKSLFVSA-------FETFREELVCKDAILDEKVELECKDCSHVFKPNALDYGVCEKCHSKNV-------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 4urlA | 0.14 | 0.08 | 0.53 | 0.53 | MRFsearch | ------SILSFVN----------NVRTK-DGGTHEVGFKTAMTRVFNDYARRINEDGNDILTAVVSVRIP-------------KSKLGTSEARSAVDSVVADKLPFYLEEK----------GQLSKSLVKKAIKAQQAREAARKAREDARS---------------------------------------------------------- | |||||||||||||
7 | 1kijA2 | 0.17 | 0.10 | 0.57 | 0.43 | FFAS-3D | -QGYNAEILTYAN----------MIPTRDG-GTHLTAFKSAYSRALNQYAKKAGPTGDDLLYAVVSVKLP-----NPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENP----RIAKAVY----------EKALRAAQAREAARKARE---------------------------------------------------------- | |||||||||||||
8 | 6dymA | 0.12 | 0.11 | 0.89 | 0.53 | SPARKS-K | ---MLKMEAVPLRLEHRQEVIDIIVASFYNKADLEQWLRTDYSDILNDIWNVLVERDLSFVVYIIGTALFDARNEPEVDIKS---------KLLIVFEFLEFCEGPIRDNYLPKGLNQILHSFMMGTALNPRENIACMHFMEHEVLRVAREKQFATSPLTQQLAVYHYLLNFQVNEYV---HSDGSRAPDEQRAIVHWKEV-------- | |||||||||||||
9 | 3mfhA | 0.12 | 0.06 | 0.52 | 0.51 | CNFpred | -------MMSNKNLR---------GKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTK----SYEVYRKSGPVAYK-GINFQSHELLKVGIKFVTDLDIKNKSYYPLTKLSMTIT-------------------------------------------------------------------------------- | |||||||||||||
10 | 3o6xA | 0.04 | 0.03 | 0.76 | 0.83 | DEthreader | ----IEALDYKLLGWEQAPIFCANDHNQ----D--K--LFHEKGMSAG---------------AAMIAINAAMANQLNEFKN-S--F-GY---NIALMHYDNQSRAVIGRFNETELACRLEVELEKYTMKVQIESRVLGDLANHIVPIAVSYQNLLECKIKEISRVIKLVM---EEVRPYL-------------SIRDHIDHLEMEID- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |