Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | FNPYERLRNTVANAHKNSLFYGTEIDVYDDKNVTGISRLLLIKPTNIIVYNRDNTVYAYLQNSVGSTCGKNEYQVIAINRDNISDVSDGIFKIVCTTISDYNLLEYFIAETPVLTLMPTYDTELFTIVDVINYCLSNGVLNF |
1 | 6n2cA3 | 0.10 | 0.06 | 0.59 | 0.67 | DisCoVER | | ------------------RLDNIVEDKKDIN--GANYYSLVSTGSNVQIFVITKSGINVP-----PDQ-NHLDGVLIANG-SLQF-----N-GGNLNIE--YVR--M-PQPLIDYLKNIIKI-------------------- |
2 | 6mf4A | 0.07 | 0.04 | 0.63 | 0.83 | DEthreader | | NSGFSGVLTVLRFWIASHTFGDVFLRYTRY-K---PFVMFELSD-GTFQFNFDHHKMAISDG---GK------LVTYISPS-HES-----TTYPLFLTLI-KEGLKQKSTI------------------------------- |
3 | 4ld1A1 | 0.08 | 0.05 | 0.65 | 0.49 | CEthreader | | -----------------------LPDGGRLVVFPNGTRKELSADGQTVKVMFFNGDVKHTM--------PDQRVIYYYAEAQT-------THITYPDGMEVLQFPNNQTEKHFPDGRKEITFPDQTVKTL------------ |
4 | 4hadA2 | 0.07 | 0.06 | 0.93 | 0.70 | EigenThreader | | YSPVWQKVRSLIDERFSTGKEPLRIQANTEPDFGTDYSSVKADDFELSFVSTQANRQIVFH----GTN--GYIEVKSP----FNANRWGPEEIELADRSHVEAFARAVENGKEEVVTLENSKLNQKVIDAIYRASEKDGWEA |
5 | 4npgA2 | 0.12 | 0.08 | 0.68 | 0.30 | HHpred | | --------------KGGVYFRDQFYEIYNNSADLYLDGIYFANPGTWYAYG--ERV-WKFPG-NGTEYPPGESCIISQFAANHQDI---YNPQSPIDGSSSE-FEFNNNQAYD-QHVFY----------------------- |
6 | 3ivfA | 0.08 | 0.06 | 0.71 | 0.80 | MRFsearch | | --SEIEAKVRYVKLARSLKTGVSFFLVKEKMKNKLVPRLLGITKECVMRVDEKEVIQEWSLTNIKRWAASPKSFTLDFGDY-------QDGYYSVQTTEIAQLIAGYIDI-------------------------------- |
7 | 6j0pA2 | 0.12 | 0.08 | 0.69 | 0.40 | FFAS-3D | | -QDDTKTVLRKVYASDSSKVLGKEVLLFNEELKGKPGEVLALRDEAVCIGTRDGAVW-----------------ITHMRERKKESIK----------LPSARVLGEFLKGVKEDPIKPWEKVDFKT---------------- |
8 | 3gbgA | 0.13 | 0.11 | 0.83 | 0.62 | SPARKS-K | | -------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCVSYEINSSSIILLKIQRFSLTSLSDENINVSVITIS-DSFIRSLKSYIKDLLLWNCEHN----DIAVLSEVVNGFREIN |
9 | 3qphA | 0.17 | 0.14 | 0.83 | 0.83 | CNFpred | | --FFETIREDLIKTLE----RGVTVSLYIDKI-KGKGNFFVRQFLNHLIGMTDGKEVVTIQN---ATFDSIGPPSFKSTYPEII--------------SQYSLIIEIFKESTLEKEIIGNDIRFFAMFHAVDFVKNHKNRNI |
10 | 2hzmA | 0.08 | 0.06 | 0.77 | 0.83 | DEthreader | | VERATPATLTL--S--SVRD-PWSIDFRTYRCSSKLMYSITFHHGRQTVLIKDNSAMVTTADIPPALVSSTGV-------------------------PESIDTILSSMQQLIKLGLLIE-LQADEICDLAYQYVRALEL-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|