>PF04791 (543 residues) MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIATLLAWYLCFLIVFILPLDVSTTI YNRCKLNVNSSPPESNGSYVTLAPSKQKCFKPWSYIPNGIMPIFWRVVYWTSQFLTWILL PFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPNFNLQWNQLQTIG IAAANTWGLFLLVLLLGYGLVEIPRSHWNGAKRGYLLMKTYFKAAKLMTEKADAEENLED IMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQERMGRNMDDYEDFDERQNSYPSEKSL VKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSASRQFVHTFQSQESENKIFQ YFYTPTVEWYWECLLRPWFYRALAIVLATFSVIVVWSECTFFSTKPVLSLFAVFIQLAEK TYNYIYIEMACFLTIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTP PLCLNFLGLTHMDATISHKNTQPTAYTSIMGSMRVLSFIADGFYIYYPMLVVILCIATYF SLG |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIATLLAWYLCFLIVFILPLDVSTTIYNRCKLNVNSSPPESNGSYVTLAPSKQKCFKPWSYIPNGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPNFNLQWNQLQTIGIAAANTWGLFLLVLLLGYGLVEIPRSHWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDIMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQERMGRNMDDYEDFDERQNSYPSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSASRQFVHTFQSQESENKIFQYFYTPTVEWYWECLLRPWFYRALAIVLATFSVIVVWSECTFFSTKPVLSLFAVFIQLAEKTYNYIYIEMACFLTIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCLNFLGLTHMDATISHKNTQPTAYTSIMGSMRVLSFIADGFYIYYPMLVVILCIATYFSLG | |||||||||||||||||||
1 | 6vejA2 | 0.11 | 0.09 | 0.83 | 1.27 | FFAS-3D | -AVGGFTRALFEAVVIVLIVSFVSLGLR-AGLVVACSIPLVLAMVFVFMEYTTMQRVSLGAL-------------------------------------IIALGLLVDDAM------ITVEMMITRLELGD-SLHDSATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALLLSWIVAVLF-------APVIAVHILPKKGRIAERFDSLLHLAMRRRWTTIFLTALLFGVSLFLPQNSSIHETRAVMDRLEATLKARLRDRLRKDYVGISTYVQPLEMGPQIDKVREYAMGLAGVLDGNPRRDRKPTDLVARLAPEVKRFADGLPANYRIEVGGTVEESGKAEGPIAKVVPLMLFLMATFLMIQVQKLFLVASVAPLGLIGVVAALLPTGTPMGFVAILGIL-----------ALIGIIIRN----SVILVTQID------AFEKDGKTPWEAVLEATH--HRTRPILLTAAAAS-------------LGMIPIAGPMAYAMIGGIVAATLLTLIF-LPALYVAWY-- | |||||||||||||
2 | 5gpjA | 0.09 | 0.08 | 0.89 | 1.42 | CNFpred | RSGAVMGFLLAANGLLVLYIAINLFKI-DWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVG----------------------DDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVK-----EIEPALKKQLVISTVLMTIGVAVVSFVALPTSKSWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTF---------AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGM-----------------SHRIRERT----DALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRASKSVGSAALKMVEEVRRQDYATCVKISTDASIKEMIPPGALVMLTPLVVGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGSDCHKAAVIGDTIGDPTSGPSLNILIKLMAVESLVFAPFFAT | |||||||||||||
3 | 2q6hA | 0.09 | 0.05 | 0.60 | 0.59 | DisCoVER | RLGLILAMAGNAV--GLGNFLRFPVQAAENGGAFMIPYIIAFLLVG--IPLMWIEWAMGRYGGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIP----LV-VAIYYVYIES-WTLGFAIKFLVP-EPPPTDPDSILRPFKEFLYSY---I----------GVPKG-----DEP--IL-KPTMPTLFILAVFLVIRV-----------------------------------------------------------------------------------------------------------------FL-LETPNG--TAA------------------DGLNFL-------------WTP-----------------DFEKLWIAAV--GQIFFTLS-----LGFGAIITY-----ASYVRKDQDIVLSGLTAANEKAEVLGGSISIPAAVAFFGVAVAKNLGFLWFFLLFFA-GLTSS--IAIMQPMIAFL--EDEAVTAAIVFFSAHLVMFLNKSLGTIGVVFFGINRGG--IIK- | |||||||||||||
4 | 4ufcA | 0.05 | 0.03 | 0.55 | 0.50 | DEthreader | LWWSEALPIGGAMLNEETF-WAGSPYNNNNLTQQHGMSY---AFTNHI-YKK-FDRVRL--T---LP---AGKASQLETPKRIENFGNGEDMAMAALL-HYGRYLLISQLSETHSLFSMLLSVTGAETAMYVDFAAAGMWPSGGAWLAQHIWQHY-------------------------FLKEYYPILKGTAQ----------------------------------------F-YMDFLVEHWLVV---S--HGPTAGCTMDNAFALTLSFQDSLKQTLEKL-PPMQIGNQLQEW---I-------------------------------------------------------------------------------------H-RHISHLYGLYPSNQISPFARLSWKFWAQIKNMKPNGRTLDAHPPFQIDGN-------------------------------------------F--GYTAGVAEMLLQHLLPALWGSVKGLVARGNFT---NI---LF----------------- | |||||||||||||
5 | 6ajfA3 | 0.07 | 0.06 | 0.96 | 0.49 | CEthreader | TSHGLNPLASELTGTIGEDQKRAEVAAIPLVAVVLFFVFGTVIAAALPAIIGGLAIAGALGIMRLVAEFTPVHFF------------------------AQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYDTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFPQGFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALGVTTLLKGFWGRLVNVVMKRPIAFAAPILVVMVLLIIPLGQLSLGGISEKYLPPDNAVRQSQEQFDKLFPGFRTEPLTLVMKREDGEPITDAQIADMRAKALTPEKMWKERPANDSGSKDPSVRVIQNGLENRNDAAKKIDELRALQPPHGIEVFVGGTPALEQDSIHSLFDKLPLMALILIVTTTVLMFLAFGSVVLPTLGSTMGILTWMFVDGHGSPQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEARERGMSTAEAIRIGTATTGRLITGAALILAVVAGAFVFSDLVMMKYLAFGLLIALLLDATIIRMFLVPAVMKLLGDDCWWAPRWM | |||||||||||||
6 | 6ek7A | 0.05 | 0.03 | 0.58 | 0.83 | EigenThreader | TRQDEVEAYLGKLLFDEIHNHALN---------WNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTDKQLENITSADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGSSGDG----------------------------------------------------------------LEPQVKTKY-----DLMEKSNMRKSIKELDEKIKEKRQRIEQLKDYDKFVGLSFTGA---------------------------IGGIIAMAITGGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSF-----------------------------------------------------------------------------------------------SDIGIRMVDAESA----------------------LNHLDFMWLSVLNQITESQIQFAMINNALRLTSFVNKFQQVITPWQSVGDSARQLVDIFDEAIKEYKKVY----- | |||||||||||||
7 | 2pffB | 0.09 | 0.06 | 0.70 | 0.47 | HHpred | ----------------------AYSTR---PLTLSH-------GSLEHVLLVPTASFFIAS-QLQEQFNKILP----------EPT----EGFAADDE--------------------------------PTTPAELVGKFLGYV-----S-------SLVEPSKVG----QFDQVLN--------------LCLTE---------FENCYLEGNDIHALAAKLLQENDTLVKTKELIKNYITARIMAKRPFDKK--S--------N--SALFRAV-GEGNAQLVAIFGQGNTDDYFEELRDLYQTYHVLVGDLI---------KFSAETLSELIRTTLDAEKNILEWLENPSNTPDKDY---------LLSIPISCPLIGVIQLAHYVVTAKLLPGELRSYLKGAHSQGLVTAVAIADSWES-FFVSV-------------RKAITVLFGVRCYEAYPN-TSLPPSILEDSLENSNLTQEQVQDYVNKTNAGKQVEINLVVSGPPQSLYGNLSRIPFSEPFHSLLVPASDLINKDLVKNNV- | |||||||||||||
8 | 6n3tA | 0.10 | 0.08 | 0.81 | 0.28 | MRFsearch | --EDQKRAEVAAIPLVAVVLFFVFGTV-IAAALPAIIGGLAIAGALGIMRLVAEFTPV--------------------------------------HFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEG-YDTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFP---QGFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALTTREEVERGFWGRLVNVVMKRPIAFAAPILVVMVLLIIPLGLPPDNAVRQSQEQFDKLFIADMRAKALTVSGFTDSVRVIQNGLENRNDAAKKIDELRALALEQDSIHSLFDKLPLMALIL--------------------------------IVTTTVLMFLAFGSVVLPIKAALMSALTLGSTMGILTWMFVDHGSGLMNYT-------PQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEAR--STAEAIRIGTATTGRLITGAALILAVVAGAFVFS----------DLVMMKYLAF---GLLIALLLDATIIRMFLVPAVMKLLG-- | |||||||||||||
9 | 3aqpA2 | 0.09 | 0.07 | 0.73 | 1.26 | FFAS-3D | --GQDAIQAGIRSALIGTLAI-----------FLLIFAYYGPHLGLVASLGLLYTSALILGLLSGLGATLT-----------------------------LPGIAGLVLTLGAAVNVLSFERIKEELRAG-KKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYAT-----GPVRGFAVIL--AIGVVASVFSN---LVFSRHLLERRFNFMGPARYVTAATLLLAALAAGVVFAKIDFVETLRRFLEEKGFPGK--------------------EAVITQVYREFLVKLPPLSDERRLELERLFASEPAIGEELRRNAVMAVLVGLGLILLY---------------------------------VAFRFDWTFGVASILAVAHDVAIVAGMYSLL-----GLEFSIPTIAA---------LLTIVGYSINDSIVVSDRIRENQK----------LLRHLPYAELVNRSINTVMTSLTTLLPILALL----------FLGGSVLRDFA----LAIFVGIFVGTYSSIYVVSALVVAW--- | |||||||||||||
10 | 6ajfA | 0.08 | 0.07 | 0.81 | 0.91 | SPARKS-K | DQKRAEVAAIPLVAVVLFFVFG-----------TVIAAALPAIIGGLAIAGALGIMRLVA-----EFTP--------------------------VHFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGY-DTEAAVRRTVMTSGRTVVFSAVIIVASSVPLLLFP---QGFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALGVWGRLVNVVMK---RPIAFAAPILVVMVLLIIPLGQLEKYLPPDNAVRQSQEQFDKLFPG------FRTEPLTLVMKREDGEPITDAQIADMRAKALTVSG---------------------FTDPDNDPEKMWKERPANDSGSDPSVRVIQNGLALEQDSIHSLFDKLPLMALILIVTTTVLMFLAFGSV-------------------VLPIKAALMSALTLGSTMGILTWMFVDGHGSNY----TPQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEARERGMSVFSDLVMMKYLAFGLLIALLLDAT---IIRMFLVPAVMKLLGDD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |