>PF04790 (256 residues) VGIYGWRKRCLYFFVLLLMVTMIVNLALTIWILKVMKFSVDGMGNLRITNQGVRLEGKSE FLLPLYVKEIQSRKDSPLMLQSDRNVTVNARNNLGQITGQLTVGSHAVEAQGRRFEIKTE DGKKVLFSADENEISIGVEKLRVTGPEGAVFEQSVETPHVRAQPSQELKLESPTRALTME APKGVHIAADEGEIKATCRRDLQLQSTDGEIFLNAKTIRLGNIPQGSASTSSTPHQTVYE VCVCPNGKLFLSPGEA |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | VGIYGWRKRCLYFFVLLLMVTMIVNLALTIWILKVMKFSVDGMGNLRITNQGVRLEGKSEFLLPLYVKEIQSRKDSPLMLQSDRNVTVNARNNLGQITGQLTVGSHAVEAQGRRFEIKTEDGKKVLFSADENEISIGVEKLRVTGPEGAVFEQSVETPHVRAQPSQELKLESPTRALTMEAPKGVHIAADEGEIKATCRRDLQLQSTDGEIFLNAKTIRLGNIPQGSASTSSTPHQTVYEVCVCPNGKLFLSPGEA | |||||||||||||||||||
1 | 3vgzA1 | 0.06 | 0.04 | 0.62 | 0.58 | DisCoVER | -----------ELR--KA--V--GK--GA--YE-AYSQQENALWLATSQ-DKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNQTLWFGNTVN--SAVTAIDAK-VKGRLVLPRELVADDATNTVYISGI----GKESVIWVVDGNIKLKTAIQNTGHPNSLAL-----------------------------------------------------------------SADGKTLYVSVKQKSEAQPDDVIRI- | |||||||||||||
2 | 3ldkA | 0.09 | 0.07 | 0.75 | 0.83 | DEthreader | ----------------------------DPCAHVGFLHIAQVFDGT--H-S-TAFRAPFVFRSEWYVAVSGGVHGVGPAQFLYR-EWWQEATNSSWGRWFNVLFTGEVFAMAGFWAYAAAGKVVSFVWLTQYGSLLLPRELKVQVVVSWVRTLGITIKL-------SKFFVL--TAQFILASLERT---------A-----IYYQF--SNESL---VVDR-SQTSAAAP-TNPGLDSFTESGVYNGRFALSTWAR- | |||||||||||||
3 | 6fptA2 | 0.10 | 0.10 | 1.00 | 0.49 | CEthreader | YGGVGLPMASFGGEGDGDGQLCRPWGICVDKEGYVVVADRSNNRVQIFKPHHKFGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILVSDTHRVQLFGPTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPRFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPGTHGNGFGQMDRPSGIAVTPDGVIVAVDFGN | |||||||||||||
4 | 5oqlA | 0.05 | 0.05 | 0.87 | 0.63 | EigenThreader | HRQGVV-----------------------------GAYFSKDQETIYTVSAVFEWKVNKHFRCAAYHALLVAGFEIDFVTINKSGEWLAFGASKLGQLLVWEWQSESYILKQQNSLVYSPDGQRIVTAADGVTACEFAKKFTASLDGSVRAWDLFTC-MAVDP--SGEVIAAG--SISSLAGSVLVSGSWDRTARIWSIFDVLDVARPDSAISTLDGGVDGRRDVSGGRRIVAGTKNFNTIRYSGTCLLAGGNSKY | |||||||||||||
5 | 3jx8A | 0.16 | 0.11 | 0.67 | 0.35 | HHpred | --------------------------------------------------DEITFVGSADF-------EYEQDKAPYLSVTIDEN--------L-FDYLVTEVEGGTLKI-------YPKSIKKYDLRPTVYKIKSELKELNTVGSGSFIISKP-----TKVNR--EIN--AGSGNVELRGGYKLECNAGSGNIIAKQLDNLSCSASSGEIEVIGTRIKAFDCQARKAE-CNIASSGEISVYATGSGEIHYKGD-- | |||||||||||||
6 | 6sjlA | 0.14 | 0.11 | 0.75 | 0.60 | MRFsearch | ---LDMDEAIRQLEQALSLARSMAKAATAANA------------GMLLHPDGIGMVSAR-----------------ALRIASGESVGIMSG-----DNTDITAGQSFTVVAEGAVSLLSRNQGMQLLAAKRVNIQAQSDDLSMSSQ-------------------QNLDIQSSEGKVTVSANQELILACGGAYIKLSG-GNIELGC-PGQILLKSTNGGGFILTDEAGVPQ---PSTPYRLTTA-EGDILQGI--- | |||||||||||||
7 | 6mitC | 0.08 | 0.05 | 0.64 | 0.60 | FFAS-3D | ------KTRRWVIILLSLVALILI------GVNLDPTYKSDHSDTVVYSPE-----GALNY--RLIAQHVEYFSDDGISWFT--QPVMTTFDKDKVPTWSIKLTNDRMLYLYGHVEVNALTA-------DSQLRKITTDNAQINLVTQDVTS------------QDLVTLYGTTFNSS---GLRMRGNLRSKNAELIEKVRTSYEIQN------------------------------------------------ | |||||||||||||
8 | 3jx8A | 0.09 | 0.07 | 0.82 | 0.85 | SPARKS-K | -----------------------DKRIDGNGNPETREIKISDYDEITFVGSAFEYEQSVTIDENLFDYLVTEVEGGTLKIYPKSINSYDLRPT--VYKIKSNSKEKELNTVGSG-SFIISKAGSGNVELR---GPVKGYKLECNAGSGNIIAKDIQLDSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDRKAECNIASEISVYATQIDANIVGSEIHYKGDPEISKSIGSGSINKVK----------------- | |||||||||||||
9 | 3jx8A | 0.06 | 0.04 | 0.73 | 1.05 | CNFpred | ---------------------------------DEITFVG--SADFEYEQ-YLSVTIDENLFDYLVTEVE----GGTLKIYPKSSYDLRPT----VYKIKSNSK------ELKELNTVG----SGSFIIS-KPTKVNRMEINMAGSGNVELRGPVKGYKLECNMSGNIIAKDQLDNLSCSLAGEIEVIGTVDRASFNVAGEIKAFDCARKAECNIGEISVYA-------------TQILDANIVGSGEIHYKGDPE | |||||||||||||
10 | 4f91B | 0.05 | 0.04 | 0.77 | 0.83 | DEthreader | LRAALETDCMEIKIIYIIVCTPEKWIIHYYSGRLMRAI---FEIVLNR-----GWALTTLNKMKPLRQF----------KIEKKNFPFERLYD-------------------------KYVHLFPKLELSVVLTITPSSEAFWILVESVI----YFL--ITFFVPI--NISHTQTRLLMAVAIIVFVPSR-KQLTAVAVIIMTQYYNGHAYVDYPYDVLMVG-AN-PLQDDE-G--RCVIMCQGS---KDFFKFLY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |