>PF04780 (540 residues) RVRSYWNSMSFNMRKDLLKIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCC RCGEKFKDSELHMQHVVQEHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKM LKNESKCQQNELIDEFYTGNNTEECIDCFKDAWESSPEKGMLGDGCSCGNLVKSDSDKIP NQGSRECDGNEGSKAYLLANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQ FTTDELQGIASGSQLLNYGVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSS AMDDANSLNRDFDIKENVLLNGDASCLLLDEHLLPTENTSTASHVAVTDDAATETSPIIC NENGVQPDGGSLLSWIFTGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCER KCEHLSYEEALQAVEDLCLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNR FELDAVINVLKEAESLNMNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RVRSYWNSMSFNMRKDLLKIRISDLKAHFSSVKDGLASGVLSEALSFVEVNKVWKFWVCCRCGEKFKDSELHMQHVVQEHMGNLLPKMQSVLPQNIDNEWIEMIVNCSWKPLDISAAVKMLKNESKCQQNELIDEFYTGNNTEECIDCFKDAWESSPEKGMLGDGCSCGNLVKSDSDKIPNQGSRECDGNEGSKAYLLANSWPLADDSERAKLLEKIHVLFEMLIKHKCLAGSHLSKVMQFTTDELQGIASGSQLLNYGVDQTPTCICFLGASQLRKLLKFLQELSHACGLARSSDKTSSAMDDANSLNRDFDIKENVLLNGDASCLLLDEHLLPTENTSTASHVAVTDDAATETSPIICNENGVQPDGGSLLSWIFTGPSSVEQLASWMRIREEKSNQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQAVEDLCLEEGKKRENVTDFGSRSLESVLRKRREELRESENEVMLISNRFELDAVINVLKEAESLNMNQFGYEEHYNGVTSHLCDLESGEDDDWRSKDFLHQMDACIEV | |||||||||||||||||||
1 | 4wz9A | 0.07 | 0.04 | 0.62 | 0.65 | DisCoVER | ---VDERYR----------------------PTTSIPI-HY--DL--H----LRTEIH-----------------------------------------R--N-----ERTFTGTV-GIQLQ--VVQ-ATDKL--VMHNRGL-VMSSAKVSSLPNGPTLIGDVQYTFTSPLQPGTYLLEVAFQGRLATNDDGFYVSSY--RRYLATTQ-----------F--ESTSADEPG-LK--AT--FT------------V--SITHSLSYKAISNRTTFFEKT--P--AM--ST-YL---------------L-AFVVSDFQLRLSGAQRVYVRPNAFNEAPKLDQIAIPDFAAGAMENWGLVTYREQALLFKTNVATTIAHEYA-----------------------------HQWFGNLVS--PEWWEYI--WLNEGFATLYEFYALDMAYPGEYWELFNQVIQYAMGQDGQASTRPMNWNA-LFRVAYDKSGSVL----NMMRHWKAGLKAYLTDRA-L------------------QGAV- | |||||||||||||
2 | 6i33A | 0.08 | 0.05 | 0.61 | 0.67 | DEthreader | ----------------------------Y--Q-PEVSQGRLESLLNYQTVCMANAS-----------------------------------------------L---DEGTAAAEALQLCYRFQAVLTELKLPCEMDFSGK------LFQYPDEDFTELVERAHQLACCAT---------------PPGEFGVDI------ALGSSQRFGVPLGYGGPH----------------------GRMVGVTRLALQTREQIRKATSNICTAQALLANMAED-SLCTMKLNSSSELA------ELEKDLCEGYDQVCFQPNS-------GAQGEYAGLATIRALNGRTVCSAHMAGMKIQPVMVKHKNLAA--IMI--TYPSTNGVFENMNAQVGICRPGDFGS-KQTETAILNANYGHEPTMVEPTESEDKAELDRFCDAMISIRQEIADIGIDPRVNPLKMSPHSLTCVTS-----------------------------L------PFVK-EN---------------------------- | |||||||||||||
3 | 1vt4I3 | 0.06 | 0.06 | 1.00 | 0.75 | CEthreader | YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
4 | 5dseA | 0.07 | 0.06 | 0.84 | 0.83 | EigenThreader | YLQEIERVLGFFLETGL-----QRAHVLYFKNGNLTRGVGRFRELLRA-------------VETR--TTTIARQLAEILLRGMCEQ---SYENTEEALLLLLISESMANRSVVYDLLTIALGRRGQYEMLSECLERAMFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIPLLAAKLCMGSLHWLEEAEKFAKTVVTSEFKAKGYLALGLTYSLQATDASLRGMQEVLQRKALLAFQRAHSLSP-----------------TDHQAAFYLALQLAIS-----------RQIPEALGYVRQALQLQGDD--------------ANSLHLLALLLSAQKHYHDALNIIDMALSEYPENFILLFSKVKLQSLCRGPDEALLTCKHMLQIWKSCYMTLAQIWLHAAEVYIGIGTQEAANLFSHNVLYMRGQIAELRG-------------SMDEARRWYEEALAISPTH------VKSMQRLALILHQLGDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSL-- | |||||||||||||
5 | 2pffB | 0.17 | 0.12 | 0.70 | 0.57 | HHpred | --------LTEFENCYLEGNDIHALAAKLLQENDTKTKELIKNYITARKKSNSALFRAVGQLVAIFTDFEELRDHVLVGDLIKFSAELSELFTQGLILEWLENPSNTPDKDLSIPISCPLIGVQLAHYVV---TAKLLGFTPGELRSYLKGATG-----------------HSQGLVTAVAI--------------AETDSWE----SFFVSVRKAITVLFFIGVRYEAYPNTSLPPSILEDSLE----------NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG---KQVEIS-LVNG----------AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI------------PFSERKLKFSNRFLPVA--SPFHSHLLVPASDL----------INKDL------------VKNNV-----SF----------NAKDIQIPVYDTFD-GSDLRV----L------SGSISERIVDCIIRLPVKWETT---TQFKA--------THILDFGPGG------------------- | |||||||||||||
6 | 6gmhQ | 0.14 | 0.09 | 0.68 | 0.78 | MRFsearch | --GSLYAASEDQEKRDIAKGHWIELAQILEQTDIQGALSAYGTATRILQEKVALHFRL-----GNLGEAKKYFLASLDRAKAEADEHYYNAISVTTSYNLARLYE----AMCEFHEAEKLYKNILREH-PNYVDCYLRLGNFYEASDWFKEALQI------------------------------------------------NQDHPDAWSLIGNLHLKFERILKQREKEKRHQDRALAIYKQVLRNNGIGAVLAHKG--------------YFREARDVFAQVREAVEQKQYISAVQMYENCLRKFYKHQ-----------NTEVVL-----------------------------------------YLARALFKCGKLQECKQTLLKARHVAVLNAVKELELAHRYFSYLSKLEARQCSDLLAQYHVARARKQDEEERELRAK-----QEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNI-------------------------------------------- | |||||||||||||
7 | 6zu9q | 0.09 | 0.09 | 0.91 | 0.90 | FFAS-3D | -----------EKLLDEMQDVYNKISQAENSWLTSNEFDLISRLLVRAQQQNW---GTPNIFIKVVAQVEDAVNTTKQRVKKVSRENEDSMAQEDFFTRLQTIIDSRGKKTVNQQSLISTLEELLTVAEKPYEFIMAYLTLIPSILDQTIDTYQVNEFADPIDFIEDEPKEDSDGVKRILGSIFSFVERLDDEFMKSLLNIDPHSSDRDEQSIYNLILRTQLYFEATLKDEHDLERALTRPFVKRLDHIKSENLIKI------------METAAWNIVDNLIDGLSTILSKQNNIAVQKRAIQTAKDMLLTSQVQTNINQFDSSLQILFNRQILNDLLSSSHLREILGQQSLHRISLNSSNNASADERARQCLPYHQHIN---------LDLIDVVFLTCSLLIEIPRMTIRRSLEHYDKLSFQGLRDYVLFAAKSMQKGNWRDSVALLPNMETVLNSLTERVQVESLKSSFSVAKLAELFDLNKVVEVLQSVIAELEIPAKLND-----EKTIFVVEKGDE-ITKLEEAMVKL------ | |||||||||||||
8 | 5xwpA1 | 0.13 | 0.12 | 0.94 | 0.76 | SPARKS-K | NVKEAFDKLKEEDIAKLVLIEKYKIREFYHEINNKELIEKLKKSQVFYKYY-----------LDKEELNDKNIKYAFCHFVEIESQLLKNYVYKRSNDKIKRIFEYQNLKKLIENKLLNKLDTYVRNCDGEIATSDFIARNRQNEAFLRNFSLRNILETENENDITGRRGKVKNNKGEEKYVSGYNENKKNEVKENLKFYSYDFNDNNEIEDFFANIDEAISSIRHGIVHFLEGKDIF------AFKNIAPSEISKKFQLKYTYLILKLLNHKELTNLKGSLEKYQSANKEEAFSDQLNLLNLDNNRVTEDFELEA------DEIGKFLDFN----GNKVKDNKEFDTNKIYFDGENIIKHRANIKKYGLNLLEKIADKAGSIEELKKYSNKKEKNHKQ-ENLHRKYAEDYESYKQAIENIEEYTHLKNKVEYIEEIFNFENKKNVKKGGQIVEKYIKFYKELIKVLKQEKK---DLYIANYIASLLEVLENLRKLNAVKYGFVATFKKIGIQTLESEKIVHKNLKKKKLTDRNSEELCK | |||||||||||||
9 | 4fgvA | 0.10 | 0.07 | 0.74 | 0.97 | CNFpred | QYPRFLK-----AHWKFLKTVVNKLFEFMHESHEGVQDMACDTFIKIAKQCR--RHFVALQPSENEPFIEEIIRNIGKI-TCDLTPQQVHTFY-----EACGYMVSAQGNRNQQERLLAELMAIPNAAWDEIIKAATM---------------------------------------------------------------PGILHEPDTIKIIGNIMKTNVSACSSIPYFFPQIGRLYNDMLQMYAA--TSQLISEAVARDGEIATKMPKVRGLRTIKKEILKLVETF-VEKAEDLQAVRSQMIPGLLDSVLVDYNVPGARDAEVLKAMTVIIT------------------------RLQGLMEDQVPAIMENVFE-----CTLDMINKDFAEYPEHRVEFFNLLRAINLYCFPALLKL-DNRQFKFVIDSCMWASKHD---NRDVETAGLNMCLELINNIAEKTDVQTCN--AFFNQFFIRILQDVFFVLTDT-----DHKAGFKTQSMLLMRLF---------------------- | |||||||||||||
10 | 5d06A | 0.08 | 0.05 | 0.60 | 0.67 | DEthreader | ---------SYGQGVLTLPSYNCPQFDREKF---------T---LP-LSVNMIHFTPQYSIYDQLEFDPTVTD-VN-TANNSQ---LDFSEQMVVMDGIKE-VI---------------------DNIPSKDNLAQFVRDNA--TE-PG-----ERGSNKIN-IDKFAAILKKLHSEDY------GIEELATKILNDINLPFYKE-----D-DINEVLEQLFNRIKYLRLPLSEPYFT----ALA------------------------DFASSQSKAYLRREVIVWGD--------AMQAWSEELSRLVHHGGR----V-------PHALFSAIGSVYGYDEVFPYSAENTGISKVKTLLNNMREEIASEAV-----------------------------CRLRAMQLMSGATTGRYEEAKEHILAFAKTLKHGLIP-----------------------A---V---Q--VTIGVSLLQEKVTRRFPLYIPYDDPKA----------FS---------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |