>PF04700 (186 residues) RFQSDTELIEYYANLEKKYGGVVKLNGAHGIFDKSFIISPIMKAYADRFYKRRLNLAASH LSDVFKYQMANAVTQNKPLPMLTNDITNEYMQMLYQKTEIAPNIQKVVDERNNERLRVCT DIINGVVEDLLYGTHNGYYINNALHPKLRTAVHRFRNNITYLLNSPLTLSTNVFNLMEYK ALQNGQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | RFQSDTELIEYYANLEKKYGGVVKLNGAHGIFDKSFIISPIMKAYADRFYKRRLNLAASHLSDVFKYQMANAVTQNKPLPMLTNDITNEYMQMLYQKTEIAPNIQKVVDERNNERLRVCTDIINGVVEDLLYGTHNGYYINNALHPKLRTAVHRFRNNITYLLNSPLTLSTNVFNLMEYKALQNGQ | |||||||||||||||||||
1 | 4aq4A | 0.05 | 0.04 | 0.76 | 0.74 | DisCoVER | VTTIP--FW--H--SM--EGLGVDAQ--KIVPTY-KGNYEQNL-APAILQ--LSQPFN-SST-PV-LYYASGWQGWIQFSAWNNGFG-DFS-YVGRKDESTEKF--------------YNGDCAMTT-ASSGSLAGVGMMPQNA-------I--IG-GASLWVETGYLGADTATRQMLNFTKGLR- | |||||||||||||
2 | 5ez3A | 0.09 | 0.08 | 0.82 | 0.83 | DEthreader | RHQARAARF-LTTSASLAALGMMSKKLGNR---S-V-LTRLDC-VA--GL--RSGLAAMALDVAGATALSMRLARAFTVKYKAGNVMALDVAVLPLFGVLDIRALQLTETDQGVARLLTEQLAFAAAAAELRQGADDIAFIETRGGLWRTYGML-HAMRIIQLYP--------------------- | |||||||||||||
3 | 3n0fA2 | 0.07 | 0.07 | 1.00 | 0.56 | CEthreader | DVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVYHDIISRPSHIFRLCNDLASASETANSVSCYMRELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLAR | |||||||||||||
4 | 5udiA | 0.05 | 0.05 | 1.00 | 0.57 | EigenThreader | LKCGGKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKIKVLLALKLQDEEGEKYIEEALAAAKFYRRKGSVDKALELLKKALQETLHHQIGLCYKAQMIQIKEATKGQPRKMIRSAIFHFESAVEKKPTFEVAHLDLANHRKAEENFQKLLCIHFHYGRFQEFQKNAIIHYLKAIKIEQA | |||||||||||||
5 | 5n9jB | 0.11 | 0.06 | 0.61 | 0.25 | HHpred | ---------------------------------------------------DEMKSLASRLEDTTQYDLALIVYNLEDTTDAIPESLDTLIRDLKVNNLIPQDVLEYIEQGRNPDV-YARQFSELVQK----D-----------NQYVNGKLYAIQKAFAEEIKQAYPEVSSVVDKILNEG----- | |||||||||||||
6 | 5yfpE | 0.12 | 0.10 | 0.86 | 0.43 | MRFsearch | ---IETSMQNLINDVETVIKNESK------IVKRVFEATHVIQLFIQRVFAQK-------IEPRFEVLLRNSLSI----------SNLAYVRILHGLFTLFGKFTKSLIDYFDDSNQILSTTLEQCFADLFSHYDRSKYFGRSLEAILVDMTSKFTDKYKEKLSTSLNDVDSMLKCVVESTARVME | |||||||||||||
7 | 5jxdA | 0.14 | 0.13 | 0.92 | 0.74 | FFAS-3D | VFNSKNLAVQAQKKILGKMVSKSIA---TTLIDDT--SSEVLDELYRKEYTQNKKEAERVIKNLIKTVIKLAVHRNNQFNQDELALMEKFKKKVHQLA---MTVVSFHQVEYTFDRNVLSRLLNECRELLHE------IIQRHLTAKSHGRVNNVSDFLAALYNPFGKFKPHLQKLCDGIMLDEEN | |||||||||||||
8 | 6w2vA | 0.09 | 0.08 | 0.88 | 0.60 | SPARKS-K | QSTDPNLVAEVVRALTEVAKTSTD----------TELIREIIKVLLELASKLRDPQAVLEALQAVAELARELAEKTG------DPIAKECAEAVSAAAEAVKKAADLLKRHPSEAAQAALELAKAAAEAVLIADYPK-------SDIAKKCIKAASEAAEEASKHPIKEASQKAEEVKERCERAQE | |||||||||||||
9 | 5cwoA | 0.12 | 0.11 | 0.95 | 0.72 | CNFpred | LRDSAKELRRAVEEAIEEAKKQGNPELVEWVARAAKVAAEVIKVAIQAEKNRDLFRAALELVRAVIEAIEEAVKQG------NPELVEWVARAAKVAAEVIKVAIQAEKEGNRDLFRAALELVRAVIEAIEEAV---KQGNPELVERVARLAKKAAELIKRAIRANRDERREALERVREVIERIEE | |||||||||||||
10 | 5hb4B | 0.06 | 0.05 | 0.87 | 0.83 | DEthreader | VSLTWSQIFKELEYFTT-KVC--S---------EIE-SALMLECYLRLIALARLIMNLVDTILKSVWMTNPPECEMMREFGTGFEQSNAFIQLLTTLLVPNDSVPFPE--WLGSSTLGIEPYVDFVFDVFANRTKDISQLRILRLSCLDFVM-MEWLFNE--------H-RPEVLAAYSAFSSRIL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |