>PF04684 (627 residues) NYYEYKHPVINNYLAVGSGDGDGDVGDVGDGDGTRKFQDLQEWYNVINDYEFKSRCPIIL KNSHKNKHFTFACHLKGCPFKVLLSYAGNETTGSPEENEPASGGSGGFAPRPHPTVDSIL AATAADVLSHSELHSLAGKQAARGTDQEQETDVNGGDANVSAAIAAAVAAVQDDEGAVAS TSHVQLKRETDKGLEGKHEEHGDGGARLEDHGISFSQEDPVRGPFIVTKIEPYHNHSLEE NMALDKFVLTKVPRILQHDLNFDEVLEELYRRGNNSMNKFKVSQFVEESGLLEIIKRRYH LSDDDISKKFTSLISRRVTTYKARFVLKKKKMGEYKPTTPTLGSGGGGSSTVTPSGAAGA GAAGQNSPSNLHKLSFGKSSGAVIRSLYNTQPPLSSISVAAAASALTQHLQGSDQQGTDH PRRRQSNNAHGTVLEDENGTPEGSPEEHHGHDQDSHLGEDAKDVQAAAQAAMSESTALKR GGPALPEDDLERYIKRSKHNTQSNKNQPVDEGINLDEIPDDKLPHDVAEQLRLLSSHFKE VESHGLGQVDGEDDDEDEGNDADRDSDIDILGRDEHSNSSSNGDNESITDAQQAAPGSDG TPEEDPREDGKNTSIPDENIQPELRGQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NYYEYKHPVINNYLAVGSGDGDGDVGDVGDGDGTRKFQDLQEWYNVINDYEFKSRCPIILKNSHKNKHFTFACHLKGCPFKVLLSYAGNETTGSPEENEPASGGSGGFAPRPHPTVDSILAATAADVLSHSELHSLAGKQAARGTDQEQETDVNGGDANVSAAIAAAVAAVQDDEGAVASTSHVQLKRETDKGLEGKHEEHGDGGARLEDHGISFSQEDPVRGPFIVTKIEPYHNHSLEENMALDKFVLTKVPRILQHDLNFDEVLEELYRRGNNSMNKFKVSQFVEESGLLEIIKRRYHLSDDDISKKFTSLISRRVTTYKARFVLKKKKMGEYKPTTPTLGSGGGGSSTVTPSGAAGAGAAGQNSPSNLHKLSFGKSSGAVIRSLYNTQPPLSSISVAAAASALTQHLQGSDQQGTDHPRRRQSNNAHGTVLEDENGTPEGSPEEHHGHDQDSHLGEDAKDVQAAAQAAMSESTALKRGGPALPEDDLERYIKRSKHNTQSNKNQPVDEGINLDEIPDDKLPHDVAEQLRLLSSHFKEVESHGLGQVDGEDDDEDEGNDADRDSDIDILGRDEHSNSSSNGDNESITDAQQAAPGSDGTPEEDPREDGKNTSIPDENIQPELRGQ | |||||||||||||||||||
1 | 4lmgA | 0.19 | 0.04 | 0.19 | 1.19 | HHpred | ----------------------------HL-DPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDSSK-VTFKCRSVACPFRIRAAYS------------------------------------------------------------------------------------------------------------------------------------VRLQKWNVVVMNNIHSHELRFDLITKTDDYKKFKENLRQKNDEK------------AIKTFDELEYKASLNLP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 5jcss | 0.10 | 0.09 | 0.89 | 1.12 | SPARKS-K | GETVKAANISTVRINEDHQKDSSNKIYNLNMIGMRIWNVIE-----LEEPSEEDLTHILAQKFPILTNL--IPKLIDS-------YKNVKSIYMNTKFISLNKGAHTRVVSVLDILFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKAL---------EPIIQAIGESLDIASSRISLFLT-QHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNS--------TLFAFTNHSLRL------MEQISVCIQMTEPVTTVVQQLAKMLAKKLTVINVSQQTETGDLL-------GTVAVPIQENFETLFNAT---------FSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENA--KKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTLLDEVNLATADDLLTEPDSRSILLSEKGDAE-------PIKAHPDFRPATDVGKRDLPMGIRSRFTEIYVHSPERDITDLLSIKYSVSDEWVG---NDIAELYLEAKKLSDNNTIVDGSNQKTDIIHIYGLRRSLYDGFCMSFLTLLDQKSEAILKPVIEKFTL--GRLKNVKSIMSYIITPFVEKNMMNLVRAT | |||||||||||||
3 | 4bhdA | 0.07 | 0.04 | 0.53 | 0.93 | DisCoVER | IHEWMRESI---KLIASE--------------NIT---------------------SLAVREACAVELCIELSKL---KAEHANVQPTSGVVANLAVFFAE-----TKPGDKLMALSGGHISHWKAAGIRGLKVINH--PFDPEEMNIDADAMVILKPKLIL--FG--GSLFPFPHPVAYKIAYDGAHVLGLIAGKQFQDPLREGAEYLMGSTHKTF-FGPQGGVILTTKA---------------------------------------KIDSHVFPGVNHH--LH-H------------------------KA-GLAIALAEML-------EFGEAYAKQVIKNAKALAQAL----------YERGFNVLC-DFTESHQVII--DIESSDIEFSASLAKMY-EEA--N------------------IILNKNLLPWDDVNNSDNPSGIRLGTQEMKRIAEKPEKVR---E----DVKEFA-----------------------------------------KEYST-IH-YS------F-------------------------------------------------------------------------D-EGDGFKYLRF- | |||||||||||||
4 | 1bxrA | 0.06 | 0.04 | 0.63 | 0.67 | DEthreader | IVASNPATIMTDMSALASKATGFPAKDITPSIDY-----------------N-EKFA----------MKS------------VGEVM-AIGRT--QQESLQKALR------ATGFDPKVSLDDPEALTKIRRELRIWYIAAFVGVFNTNIDRWF---IE-------------LRQLKRKGFADARLAKLA--G--VRE--AE-IRKLRDQDLHPVYKMYSTYVLGGGPN-R----------------------------------IG-QG-----IEFDYC---------------------------------------------CNPETVTDYLYFEPVTLDVLEIV---------KP--KG-----VIVQYGGQTP-LKLARALEAAGVP-VIGTSPDAID-RAE-DR--ERFQHAVERLKLKQ---RPSY----SNDAP-------LAFELQVRGLMNVVNRAARTVPFVSKPLAKVARVSLAEQGVTKEVIPP-YY--SVKEV-------------------VLPFN-FDPLLGPEMR------EVMGVG-TFAEAFAAQLSS--LLSVRDKVLAAKLLKQGFE-----QDRIKNGEYTYIINDSRVIRRSALQYKVHY--- | |||||||||||||
5 | 5khaA | 0.08 | 0.06 | 0.79 | 0.80 | CEthreader | EQANQAKKQDADLIIFPELSVIGYPAEDLLLRPNLNKRMQKAFAQLSEVKDIVMVFGFVNQTEDGQRYNSAAVMKDGQVLGVFNKHNLPNYGVFDEKRYFQKGHQHLVFEYLGHKFGVIWSINTVKQLSQLNVDTVLVLNSSPYEVGKPQHRKQTLSELAKQLHLNIVYV-------------NQVGGQDDLIFDGTSFVSNQNGEIALQAPSFKEDLYIAEFDRDTKLYKVVESAPALETFAEIYQGLVMATRDYVERSGFPGVILGLSGGIDSALTLAIAVDAIGAERVQAVMMPYTYTSQISVEDAAEQARRMGVTFG-----------------------IAEIHSIVNSFMQTLYPFFGNSPADATEENLQARARGTLLMGLSNKFGNLVLSTGNKSELSVGYCTLYGDMVGGFAVLKDVYKTIVFELAKYRNSLSETPV---IPERVITRSLPAYDVLDAILYAYIEEDLGQADIIAKGFDKEVVEKVIRLVDRNEYKRRQGAIGPRITSRAFSRERRYPIVNGWTAND-------------------------------------------------------------------------------------------- | |||||||||||||
6 | 7abhu | 0.04 | 0.04 | 0.93 | 0.88 | EigenThreader | NLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGVQQIAILMGCAILPHLVDEQQKVRTISALAIAALAEAAT----------PYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDDTTVELANKVGAAEIISRIVDDLKD------EAGAADID-HKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCVNVI----------GMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSFELLELLKAHKKAIRRATVNTFGYIAKAIGTLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDY--------IYAVTPLLEDALMDRDQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVF---------ETSPHVIQAVMGALEGLRVAIQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL | |||||||||||||
7 | 1pujA2 | 0.14 | 0.02 | 0.12 | 0.38 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRLAVTGAIKDIINLQDVAVFGEEHY-PERLKERYGLDEIEDIAELFDAIGEKRGCKTTEVIIRDIRTEKFGRLSFEQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 4lmgA | 0.22 | 0.04 | 0.18 | 0.77 | MRFsearch | -------------------------------DPVPSFEDRHEIKPWLQKIFYPQGIDIVIERSDS-SKVTFKCRSVACPFRIRAAYSVR------------------------------------------------------------------------------------------------------------------------------------LQKWNVVVMNNIHSHELRFDLITKTDDYKKFKENLRQKEKAIKTFDEL--------------------------------------------------EYKASLNLP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3cnfB | 0.11 | 0.10 | 0.89 | 0.69 | FFAS-3D | -AREVS-PMFNVHELKKIAESFEDPSSIVVVLEFILFNVLLLFFSRWYPVEYGIFVQRGFEFSGRNEKFS-DVPLAGAN----TIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRNANLQMHESVLEIADIFDQADFIQTSDAV-RQLRALMPTLSTSQIRH---AIERIAQITDVDSTDYGKLTLRFLGTL------------TRSLKMQNAQIRRIRGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPRIARRFNGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPH--------------------------VHMTINE--------------RAGMSKLVADNIIASVIKSNWVVDILD-----IEYTAEVMTPSEGYTQHV--DAESIMTAPKGKLFHLQFMDGLLRPEASGQPISVARSMRAIVNHNEVDRPREMDTGTLSRNGDLLYSPVANGQ | |||||||||||||
10 | 5yfpB | 0.06 | 0.05 | 0.96 | 1.12 | SPARKS-K | RFQIGDEQLLRFYQLKTINPTSWAQDSSKKESRAYLNESLSYIRDPLNGQEMSKE----LQHLPNDSM-----RLNYLV------NSKQFNVKAFLRDMHKQDSFNDLNNSLDRLDSDIQDQSIHLKQLKNKLDQIYKEFDEKTNEKNQCDSPKENQESLNKKVDEVIRTTTFKLKPLMDNYQKILNYQATKKFIELNKFYFNLPKSLKRCLTNNDFNEFII----------EYSKGLTLRRRFNQSVIKRIWTQIENLLVYKDLIWNSLINSNFN-IDQPQETILSLFSKLLNLENFIKNTTSIKMNGFQNELNELSGHMISKIIHSQRLILQNNTNQDKSQGCVINQLFQIISDTGKDSEGLKSTVEPNKVNTISGTSYLNLNCQPSSQGLTDSPTIIEMWLLILKYINDLWKICDQFIEKFLDGTYQNSIINEKRKENILIGDSNIIESYQKSLILKEEQINEVRLKGEEFITSVSQNLISFFTSSQSS-LPSSLKDSTGDITRSNKDSGSPLDIPPNCNGLSCLRYLPKIVEPILKFSTELAQLNITTNGITLENWQVYETVTFSSKSQDSSKNLTFEYGVTQFPEIVTSFQEVSAYEKLPIINGISVVSYPSKQLLTGIEIQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |