Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | QNSKYSFDMAFGGGGFAISYPLARVLAVSFDSCLMRYSHVYGSDSRVFSCLVELGVRLTHEPGFHQVDIRGDLFGMLSAHPLAPLLSLHHLDYMEPIFPNMNRTQALEHLFGAVKVDPERILQHIVCYDHSKLWTISISWGYAVQVVESNKLLPDLLALQRTFMPWKRSANSGQYMFNTRESPKNQCERPTLFFLESVFSDTDRITSNYNRYSFKNCSRRSSSKNLELVRVFSQKLELDVGKLQAPRRHCC |
1 | 3zmoA | 0.07 | 0.04 | 0.49 | 0.57 | DisCoVER | | FSVYSGTQRVKVGEF-V------------------VPAGASWVL-PN-------------PVPVILKLYDTQLDVFLAKRTKEFLAKVQYASYYTEQLRDAKFYQN--IL-QTL------SPLGVVLREG--------DVLEV------------------YV-EAP-----AGVTVNLDPR---------TRIE--------------------------------------------LPIGVDNSNP-- |
2 | 7bwmA | 0.07 | 0.05 | 0.73 | 0.67 | DEthreader | | ------------------GLGLP-QQRTESSTTALKVKNARS--SVQLK-ADDFGTA-PWRP----PKWNH---GFFN------PRRHP-WFAPIALPFEAYFANSIGVRMAVAAGTI-TMGDTATRLLESNLNLVQ-LREDLQLFTPYGWANRPQVNWSDFVNENEFAEERF--------------------LDVPWIG--------TFSPTADWNALSFTNKNNQRAQLTPQDPRLPEHNALAFQVS-- |
3 | 3v9fA | 0.05 | 0.05 | 0.99 | 0.48 | CEthreader | | VQAGKGLWVCTYYRGIEY---LDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHPGNDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNLSSYIFSIKQLKDNKLTELNGIILDLQQNFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGWSQNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNSVLCSLKDSEGNLWFGTYLGNISY |
4 | 5ndxA | 0.09 | 0.09 | 0.96 | 0.55 | EigenThreader | | YTNYYDACVAGLDAITARTL----SPIFRALMAHCDSGTSCLTTLLVVDYLKEHHPRLAGLPINDECDPQLGWSDRRIIAPKAANFTFLSSDHAFIGGWSQRTIPGLTSMELLATDPDQDGLAILPTRLPGGGVISLIHSVDCLLRIDEEFTN--PMEVWEAQRDESNPRGPFEPVGAPPAPTGVPPAAPTGLVVERYLGLGGREERMLFWAGDISPAIAPLI--STAFLHMSPPEGVAF---GRRSELCL |
5 | 2j0aA | 0.23 | 0.10 | 0.45 | 0.98 | HHpred | | ---PSLFWFATGGAGFCINRQLALKMVPWASGSHDTSLIRLPDDCTVGYIIEKLGGRLQPSPLFHSLELQLLGAAQLPE---QVTLSYGVFEGLPGPFSHPSRFRSLHCLLYPTPWCPL------------------------------------------------------------------------------------------------------------------------------------ |
6 | 2j0aA | 0.23 | 0.08 | 0.36 | 0.60 | MRFsearch | | --------FATGGAGFCINRQLALKMVPWASGSHFVDLIRLPDDCTVGYIIECKGGRLQPSPLFHSHL--------------QVTLSYGVFEGKLNVIKDPSRFRSLHCLLY------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 2j0aA | 0.29 | 0.11 | 0.37 | 0.42 | FFAS-3D | | ----SLFWFATGGAGFCINRQLALKMVPWASGSDTSALIRLPDDCTVGYIIECLGGRLQPSPLFHSHLETLKLPGPF-SHEEDPFRSLHCL-----LYPDTP----------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 2q43A1 | 0.08 | 0.07 | 0.89 | 0.55 | SPARKS-K | | -----------KLLEFAKSPEVFDWMVKIRRKIHENPELGYETSKLIRSELELIGIKYRYPVA------ITGVIGYIGTGEPPFVALRADMDALWEHKSKIAGVTMLLGAAKILHEHRQGTVVLIFQPAKNVEAIFGIHLSAASRAGSFLTNKDLYKQFKKVVRDLLGQE-------AFVEAAPVMGSEDFSYFAETIPG---HFSLLGMQDETNGYASSHSPLRINEDVLPYGAAIHASMAVQYLKEKAS |
9 | 1f1rA | 0.10 | 0.06 | 0.63 | 0.68 | CNFpred | | ------------VAAFAYRVKS------------------PAEVDAAEAYYKELGCRTERRDSVRVEDPLGFPYEFFYET-AGELVRLDHFNQVTP------DVPRGRAYLEDL-----GFRVSEDIKDSGVTYAAWMHRKHDTALTGGN-EKHNIIQICDKMGAL----------------------ISDRIERGPGRHGVSNAFYLYILDP-----------DGHRIEIYTQ----------------- |
10 | 2x2hA | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | | NYDIPMYYA--QGVF----G--VD-VDMQDNLRVRDNGHLDYG-VEC-ALFPWNNYSTRISNGMWVGNSTSNYIQMMIANINPLVGSDIGGPCLMVRQ--PNEMDTLRKFVEFRYRWQVLYIIKAAMYNNDSNVRAHFLLGILCAP------------------------------------------RELYLKFGPDFDT----KPLEGAM--------GDRIYYPIFVRILPTYLDDGTNAED------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|