>PF04645 (181 residues) MKKVKRPFDDYVVYFREGSLNDREIADKLGVSKVNVWRMRQKWESGESVVNQDSRLTISE DTLEHLLSQTFKSEVNARKVRSELDIERANLELGFIRAFKQYSSVELTGMRTKIENLRAE IDALNKASSKKNKQVVNGEINSLKSELDEYIKECSIREMELYYECMKKLTTANEAESKSN Y |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MKKVKRPFDDYVVYFREGSLNDREIADKLGVSKVNVWRMRQKWESGESVVNQDSRLTISEDTLEHLLSQTFKSEVNARKVRSELDIERANLELGFIRAFKQYSSVELTGMRTKIENLRAEIDALNKASSKKNKQVVNGEINSLKSELDEYIKECSIREMELYYECMKKLTTANEAESKSNY | |||||||||||||||||||
1 | 6aqjA | 0.06 | 0.04 | 0.64 | 0.78 | DisCoVER | GKKIAVVG--YG--SQGHAH----A--QNLKDNGYDVVI--GIDVFPVEAVKQADVIMVL--LPDEQLAFAHGFNIHFVDVFLVAPKGPGHVRPSLFGIQIALSYAK-----------------------------------------------G---IGATRAGVIET-TFKEETETDL- | |||||||||||||
2 | 7d7nA | 0.06 | 0.04 | 0.77 | 1.00 | DEthreader | CGLGLERALNVL-------------VSNRTWSYLVFNVIP--------------TLADIIIGIIYFSMFFNAWFGLIV---FLCM------------SLYLTLTIVVTEWRTKFRRAMNTQENATRAAVSEVYREAIIKYQGLEWKSSASLVLLNQTQNLVIGLGLLAGSLLCAYFVTEQV | |||||||||||||
3 | 5x11A | 0.09 | 0.08 | 0.90 | 0.61 | CEthreader | KDPMRVLKYAILGLLRKGELSGYDITSYFKAKHSQIYPELKKLTDEGFITFRTTKKMYTLTDSGKQELHDWLIRHQPIPETVKDEFMLKAYFISSRQEASDLFTDQLLKRKAKLSDLQGSYEKLMASPMSFSSPD-FGHYLVLTKALEREKNYVSWLESILAMI----------------- | |||||||||||||
4 | 3qx3A | 0.07 | 0.07 | 1.00 | 0.65 | EigenThreader | SLVDGFKPGQRKVLFTCFKRNAGSVAEMSAYHEQALMMTIVNLAQNFVGSNNINLLYDAREIVNNVRRMLDGLLAQAEAAGNSMVLFDHMGCLKKYETYGLRKEWLVGMLGAESTKLNNQARFILEKIQDFNYILNEKVEELIKQRDAKGREVNDLKRSDLWKEDLAAFVEELDKVESQER | |||||||||||||
5 | 2cg4A | 0.10 | 0.06 | 0.64 | 1.01 | HHpred | YLIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIIDVSPKQLGYDVGCFIGIILKSAKPALAKLESLDEVTEAYYTTGIFIKVMCRSIDALQHVL-INKIQT----------------------------------------------------------------- | |||||||||||||
6 | 3g3zA | 0.12 | 0.07 | 0.61 | 0.42 | MRFsearch | ----YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ-----------------------------------GLIEWQEGERRKRLLSLTE--------TGKAYAAPLTESAQEFSDKVFATFGDKRTTRLFADLDALAEVEKTISENK----------------------- | |||||||||||||
7 | 2tmaA1 | 0.09 | 0.07 | 0.80 | 0.74 | FFAS-3D | MQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKG-------------TEDELDKYSEALKDAQEKLELAEKK----------------ATDAEADVASLNRRIQLVEEELDRAQERLATALQEEAEKAADESERGMKVIESRAQKDEEKM-EIQEIQLKEAKH------- | |||||||||||||
8 | 4uosA | 0.09 | 0.09 | 0.94 | 0.73 | SPARKS-K | NEEVKKMLEKMIEEIKKMEKAIKKVKEMLEKMIKEIKKMLEKILKKKEMAEKILKMVIELAEKILKKAKEMEKILKKVKELGV------DNEEVMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLEN--GEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVG-- | |||||||||||||
9 | 3fmsA | 0.17 | 0.12 | 0.70 | 0.54 | CNFpred | --------NLLKEMIL-EKLNVRELSEKLGISFTPVRDALLQLATE------------------------------------GLVKVVPRVGFFVTDVDKFIRETIETRIMMEVFCLENYFDKIAGS----------EELLEIKGEIDDVAASAAREFDDSDERLHKLFIRASGNELIISL | |||||||||||||
10 | 1f5nA | 0.07 | 0.06 | 0.83 | 0.83 | DEthreader | ----V-VV-AI--V-----GLYRTGKS-YLMNFSLHTKGIWMLT--------LLSSTFLIS-DSADFV-----L-KKGTSQKETFNLPRLCIRKFFPKK-KTLSGGIVARSSFKDFQKELAAQLEKKRDDCMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |