>PF04595 (325 residues) KECTISFNFDNFYYCNENIFNKQYNTLEDVLKSWAIIECFKYEKYVITGLVKIIKKYSHI TDLFFLPVGWMTGVEESGKIKSEHHVIIRTIFTGSILHIRNKIKEFLSYHSIKDLVIIQT DKELTINCFDTPEILPTAVISFFPFDTESVLIVLFFGTYNDSYCGISYVLSDNIYIIIDL LKPFVNEINILTDDITRLTSVRLFDSLSSSKKFPEKKIFSICEFISIFDKTKFSDGGVSS LPQKSINLIPYIPKKIVSLIELPSYVEIKCITKNGIDFITHIDNKRLSMILIIAKDDFVK NVTFSGTFKKENLIWKGYYTYRILE |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | KECTISFNFDNFYYCNENIFNKQYNTLEDVLKSWAIIECFKYEKYVITGLVKIIKKYSHITDLFFLPVGWMTGVEESGKIKSEHHVIIRTIFTGSILHIRNKIKEFLSYHSIKDLVIIQTDKELTINCFDTPEILPTAVISFFPFDTESVLIVLFFGTYNDSYCGISYVLSDNIYIIIDLLKPFVNEINILTDDITRLTSVRLFDSLSSSKKFPEKKIFSICEFISIFDKTKFSDGGVSSLPQKSINLIPYIPKKIVSLIELPSYVEIKCITKNGIDFITHIDNKRLSMILIIAKDDFVKNVTFSGTFKKENLIWKGYYTYRILE | |||||||||||||||||||
1 | 1vyjG | 0.07 | 0.05 | 0.69 | 0.62 | DisCoVER | ILKVLEALKD-LI-------------------------------------------N-EACWDISSSGVNLQSMDSSHVSLVQLTLRSLAMGVNLT--SMSKILKCAG-NEDIITLRAEDNADTLALVFEADYEMKLMDLDVEQL----GIPEQEY-------SCVVKMPSGEFARICRDLSHIGDAVVISCA-KDGVKFSASGE----LGNG----NIKLSQ--------------TSNVDKEEE-AVTIEMNEPVQLTFAYLNFFTKATPLSSTVTLSMS----ADVPLVVEY--KIADMGHLKYY----------LAPKI-- | |||||||||||||
2 | 1kb0A | 0.04 | 0.03 | 0.64 | 0.67 | DEthreader | ------TRGVASWSVDPQIDRSTGFKG-VGAWDGR-LIALDE---Q--TF--GQ------KGSLTITG-APR------------IGNGGAEYGVR---G--YI--TAYDAETGER-----------------WEAGGGTMWDSMTFTMYVGTGNGS-----------PWSHKRSGDNLYLSVAYKWHYILHAPKNGFFFVLDRTN------GKF--ISA---K--NFVPV-NWASGYDKH-----GKPIGIAAVPGAHNWHP------------------------AQNVPVNLMDDKKWGKPSGTG----WNGGTAVGGVL--P | |||||||||||||
3 | 2xcoA2 | 0.11 | 0.09 | 0.88 | 0.56 | CEthreader | RDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLE----------LLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGGMATNIPPHNLTELINGVLSLS----KNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSI---QMRSRAVIE-----------------------ERGGGRQRIVVTEIPFQVNKARMIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALV | |||||||||||||
4 | 1igyB | 0.05 | 0.04 | 0.74 | 0.68 | EigenThreader | ----------------VKLQESGAE----------------------------------LARKMSCKASG---YTFTTYT-----IHWIKQRPGQT---------NYNQRFKDKATLTRDRSSIHLSSL--TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTVTCNVAHPV-----------SSVFIFPPKTVTPKVTCVVVDISSTFRVVSA--LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKKDKVSLTCMITFFPEDITVEWQSDGNYKNTQPIMDSYFVYSKLNVSNWEAGNTFTCSVLHEGLHN-HHTEKSLSH | |||||||||||||
5 | 5eouA1 | 0.12 | 0.05 | 0.45 | 0.29 | HHpred | --------------------------------------------------------------------KLLELSRSGGRYKVEAYAVEPLVVEVELEGVGQALSRVLVKAKTNLAVVAVAGSAVITKTIEMEAGLS-------PYPLEEVAIDFEVSARNPERVDVLLAAKENVEVREAALALAGLTAKVV--DVEAYALERSYAL-LS----SQLNPFADMALNGKV------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 2iy5B | 0.08 | 0.05 | 0.63 | 0.52 | MRFsearch | --YRVTPP----------SHRLDLRLEEDLVEEVARIEGVEAPYRKEQRLREVLSGLGRPERALLFEVGRVFR------EREETHLAGLLFGEGGYFLLKGYLEALFARLG-LAFRVEAESGRVLVE------GEEVGFLGALHPEPPVHLFELRLPLPPAAFRDLAVVVPAPYGEVEALVREYLESLALFDLYGHKSLAFHLRFR-HPKRTLRDEEVEEASRVAEALRA----------------------------------------------------------------------------------------------- | |||||||||||||
7 | 4parB | 0.16 | 0.12 | 0.77 | 0.47 | FFAS-3D | ----------------------SSDLTDYVIRQLGRTKNKRYEAYVVSRIIHLLNKKIALTDLYFPQLGIHIEVDEGHHFLRNSKMEYSLNQIDE--PLYSISQTESDAMREEDIISITGHKIFRVNVFKNQEGQPQ--------NLENI--------------------HQQIDKIIEEIKTAKNKL----------------IEASTFKEWNIETLKTTKDVCNCFGYSYKNYQRGGALHPYKKDTLIWFPR------LYENKDWINTISPDGLTITEKSTDETITIVFARVKDNLSSRAMFMGLYEFQKADLKDGAVWKRV- | |||||||||||||
8 | 6pdmA | 0.10 | 0.09 | 0.83 | 0.51 | SPARKS-K | DHVMMEVSCQDCYLRIQSISVLGEQTCILESTEIALLNNIPYHEGFKMAMSKVLSSLFYVLDVSFSVLPVIAGT----------LGQVKPYSSVEKDQHRIALDLISEANHFPKETLEFWLRMLQRPKSDKL----WSIIILDVIEP----------------SG---LIQQEIMEKAAISRCLLQSGGKIFPQYVLMFGLLV-------------ESQTLLEENAVQGTERTLGLNNQFQVPIRVFLDLSLPCIPLSLLRLTSNREVKVYVCKSG---------RLTAIPFWYHMYLDEEIRLDTVLDNPIQVEMGVLSIQHHK | |||||||||||||
9 | 4r04A | 0.14 | 0.11 | 0.79 | 0.76 | CNFpred | EDTNIKIKLDTRNFIMPTI------TTNEIRNKLSYSFDGAGGTYSLLLSSYPISTNINLDDLWIFNIDNEVREI----SIENGTIKKGKLIK-----------DVLSKIDINKNKLIIGNQTIDFSGDIDNKDRYIFLTCELD---DKISLIIEINLVA---KSYSLLLSGDKNYLISNLSNTIEKINTLGLDSKNIAYNYTDES-------NNKYFGAISKTS----------------------------QKSIIHYKKDSKNILEFYNDSTLEFNSKD--FIAEDINVFMKDD---INTITGKYYVDNNT-DKSIDFSISL | |||||||||||||
10 | 5ganA | 0.09 | 0.06 | 0.66 | 0.67 | DEthreader | AVLLETTLGEMAE------------------G-KFASFIFQYYGLVIDLLLRALMFEKIRLYTRY-L------------------DRIYMLFHFEGLAVFWEIQSRVPTSLTSIKWAVSVYSNN-------------FEVRIVWDLRTAKAYLKVSEEEIKKFD-----------------------------RE-IVAT-----------------EPL--LDILKGETRIQRVLGLQRPTKISLIQFHLWIHIDIILGELDQIESVTKETVKSADITMESV-HEWEVMWFDVQLRYGIYVKFLTYPSP-SSFGVH-------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |