Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | SSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKAGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYPYPETPLYTQTASTSYYEAAGTAAQVSTPATSQAVASSGSMPMYVSGSQVVASS |
1 | 1bvp12 | 0.10 | 0.08 | 0.75 | 0.61 | DisCoVER | | ---GPARQPYGFFLETFQPGRWFM-RAA--QAVTAVVC--------GPDMIQVSLNAGARGDVQQIFQGRNPMMIYLVWRRIENFAMASQQTQAG---------------------VTVSVGGVDM--RAGRIIAWDGLHVHNPQNAMVQIQV- |
2 | 5ganH | 0.08 | 0.08 | 0.99 | 0.64 | CEthreader | | SGKFIGSASHDMTWRLWDASTHQELLLQEGHDKGVFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQVATGGGDGIAHRNIVTQVLVSCGYDNLINVYSSDTWLKMGSLAGHT-DKIISLDISNNSHFLVSGG |
3 | 1v9nA | 0.06 | 0.06 | 1.00 | 0.53 | EigenThreader | | TKLGVPEEDAKIVADNLVADLRGVESHGGVYALIDGSKLAIKKAKDTGIGIVIARNSNHYAGYYALAAEEGIGISTTNPIALAAPTKPFLLDATSVVPIGKLEWAINREVFNGGALLPLGGGGHKGYGLSLVDILSGILSGGTWSGSNVCHFFV |
4 | 5klhA1 | 0.18 | 0.12 | 0.66 | 0.26 | HHpred | | --GTFSDVKATVRRQSLSVAGLGS-----IPSVYTEATVPVSGNTDGSQLKINTVAPFT--RRS------PL---YLSKLYLVSDGKGEYRETQYQSALYSFGHSQGYEAVPQDKLYSEG---------------------------------- |
5 | 2pffB | 0.40 | 0.03 | 0.06 | 1.02 | MRFsearch | | ----------------------------TGVRVIVAGT-------------------------------------------------------------------------------------------------------------------- |
6 | 6em3B | 0.13 | 0.10 | 0.78 | 0.28 | FFAS-3D | | -TRHEEVMPLTAVPEP-----KRRFVPSKNEAKRVMKIVRAIREGRIIP---PKKLKEMKEKEKIENYQYDLWGLRAPKLP-----------PPTNEESYNPPEEYLLSPEEKEAWENTEYSEREIPQKYSALRKVPGYG-------------- |
7 | 7abhE2 | 0.11 | 0.10 | 0.95 | 0.86 | SPARKS-K | | AVSELPGNPNA-------VWTVRRHIEDEFDAYIIVSFVNATLGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKKLFRVRMQGQEAVLAMSSRSWLSYSTPLSYETLEFASGFASEQCPEGIVAISTNTLRILAL |
8 | 2hmaA | 0.15 | 0.05 | 0.31 | 0.47 | CNFpred | | ------------------------------SKVTVHVKGE--------------KTEVIFA--------EPQRAITPGQAVVFYDGEECLGGGLIDNAY------------------------------------------------------- |
9 | 6rflA | 0.07 | 0.06 | 0.78 | 0.83 | DEthreader | | YV-SMLLTNNMYYSVAQSIVTSRGTRKKKME-----YSQ--------KQKLAKKT--ISAQVLSEKFTQQASFHTTEKQKLGFNEFNNLTNLSKTEII-FEGKISKFKIPIKMTVEYPGVTYFAAEYEA------------NTYGEFDL----- |
10 | 2nbiA | 0.14 | 0.14 | 1.00 | 0.61 | MUSTER | | PSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPISPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTSPDGSPPNCSPTMLPTPQPSTPTVITS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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