Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | NLKTRSEEDSQTQIVTGYAAVFNSPTELWEGLNEVIKPGAFSRALSNSDVRCLFDHDWGKVLGRTRSGTLKLEEDDKGLRFEVELPNTTVANDLIQSMSRGDINQCSFGFYPTEETWDYRSDPVLRTIHEVELYEVSIVSLPAYEDTEAALSRNKQEMK |
1 | 5jblA | 0.07 | 0.06 | 0.82 | 1.17 | DEthreader | | GEIIDGVPMKPGLYIEGIFLQAEVVNRN----KRLYPKEAVKDYINEQQALGELNAPDMQAAIII----EDMWWKGNDVYGRARVIEGHGGDKLAANIRAGWIPGVASRGLGS-LTDTN--EGYRIVNEGFKLTVVDAVWG------------------ |
2 | 5jblA | 0.07 | 0.06 | 0.82 | 1.00 | DEthreader | | PGEIIDGVPKPGLYIEGIFLQAEVVNRN----KRLYPKRLAVKDYINQQALGELNAPDMQAAIII----EDMWWKGNDVYGRARVIEGHGGDKLAANIRAGWIPGVASRGLG--SLTDTN-EGYRIVNEGFKLTVVDAVWG------------------ |
3 | 5jblA | 0.09 | 0.07 | 0.81 | 1.29 | MAPalign | | GEIIDGVGLKPGLYIEGIFLQAEVVN----RNKRLYPKRILEKAVKDYQVLGELNADPMQAAIII----EDMWWKGNDVYGRARVIEGDPGDKLAANIRAGWP-GVASRGL-GSLTDT---NEGYRIVNGFKLTVVDAVWG------------------ |
4 | 1o6eB | 0.14 | 0.12 | 0.87 | 1.26 | CEthreader | | ---------APSVYVCGFVERPDAPPKDACLH---LDPLTVKSQLPKKPLPLTVEHLPDAPVGSVF----GLYQSSAGLFSAASITSGDFLSLLDSIYHDCDLPSLSLASLHPD-----IPQTTADGGKLSFFDHVSICALGRRRGTTAVYGTDLAWVL |
5 | 1at3A | 0.17 | 0.13 | 0.79 | 2.35 | HHsearch | | --------RAVPIYVAGFLALYDS-GDP----GELLDPDTVRAALPENPLPINVDHRARCEVGRVL----AVVNDPRGPFFVGLIACVQL----ERVLETAAS--AAI----LS----R--EERLLYLITNYLPSVSLSTKPDRTLFAHVLTSLDAAIA |
6 | 1njuB | 0.14 | 0.11 | 0.82 | 1.00 | DEthreader | | -------Q-VAPVYVGGFLARYDQSPD-E--AELLLPRDVVEHWLHQSALPLNINHDDTAVVGHV----AAMQSVRDGLFCLGCVTSPRFLEVVVEFLS-GSYAGLSLSSRRCDDV------------EQTPFKHVALCSVGRRRGTLAVYPETQTARD |
7 | 1njuB | 0.12 | 0.10 | 0.81 | 1.00 | DEthreader | | --------QAAPVYVGGFLARYDQSPDE---AELLLPRDVVEHWLHSVALPLNINHDDTAVVGHV----AAMQSVRDGLFCLGCVTSPRFLEVRVVFLS-GSYAGLSLSSRRCDDV------------EQTPFKHVALCSVGRR-RGTLAVYGWRES-- |
8 | 1njuB | 0.14 | 0.11 | 0.81 | 1.00 | DEthreader | | -------Q-VAPVYVGGFLARYDQSPD-E--AELLLPRDVVEHWLQSVALPLNINHDDTAVVGHV----AAMQSVRDGLFCLGCVTSPRFLEVRVVFLS-GSYAGLSLSSRRCDDV------------EQTPFKHVALCSVGRRRGTLAVYGRD-WQ-- |
9 | 1o6eB | 0.14 | 0.11 | 0.79 | 1.13 | MAPalign | | ----------PSVYVCGFVERPDAPPKD---ACLHLDPLTVKSQPLKKPLPLTVEHLPDAPVGSV----FGLYQSSAGLFSAASITSGDFLEPKVEALH-AWLPSLSLASLHPQTT--------ADGGKLSFFDHVSICALGRRRGTTAVY-------- |
10 | 2pbkA | 0.14 | 0.12 | 0.84 | 1.12 | HHsearch | | ----------QGLYVGGFVDVVSCPKLEQ---ELYLDPDQVTDYLPTEPLPITIEHLPETEVGWTL----GLFQVSHGIFCTGAITSPAFLELASRLADTSHLPGLSLSSIHPRE-LSQTPSG-------PVFQHVSLCALGRRRGTVAVGHDAEWVVS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|