>PF04532 (220 residues) RLGCDALIVVGGSAMPRRVLHVPVHVRACNLTQELSTGEDARFCRPRPVNVERVRAVFAA LYRACPIHVRTEPERVKLVLGRLLLGPVAVPCFCDGEVEGHGEHLVPTTQFCRGPLLYVH RRCCCGSVTAGRALSYHVLENHVATHVLRGLLSLTEWNRELPSLFCDCPGGGGASGTEER YAMACLPRDLSLHLDDYPYLMVEIGRVLSVSEVDDYVTAV |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | RLGCDALIVVGGSAMPRRVLHVPVHVRACNLTQELSTGEDARFCRPRPVNVERVRAVFAALYRACPIHVRTEPERVKLVLGRLLLGPVAVPCFCDGEVEGHGEHLVPTTQFCRGPLLYVHRRCCCGSVTAGRALSYHVLENHVATHVLRGLLSLTEWNRELPSLFCDCPGGGGASGTEERYAMACLPRDLSLHLDDYPYLMVEIGRVLSVSEVDDYVTAV | |||||||||||||||||||
1 | 2va8B2 | 0.05 | 0.03 | 0.57 | 0.61 | DisCoVER | ------VPLIE-----------GVIYPEKKEYNVIFKDNTTKKVHGD-D---------------------------------AIIAYTGQVLVFRNRAESTAVAYHHAIEGFRQ-RKIKVIVATPTLAAGVNLPARTVI-------IG--D--IIPIMEYKQMSGRAGR-----PGFDQIGESIV------------------V--VRDKVVF------- | |||||||||||||
2 | 5lewA | 0.08 | 0.05 | 0.69 | 0.67 | DEthreader | LAAIRVGPGRGSAGSYGTDDFDDRR--MAK------------------RNLTIIGDAIDLDLESVPLDDKATELLGDTLGVFQLDG----GPMRDL--------LRRM--QPTGFVVIAYRPGMMNAHDIYLIVYQ---------------------------------MGKILPFADYAFAYGVSYW-TAYLKPEYMAGLLTSVGDDDKAVYLADCRKL | |||||||||||||
3 | 3o6qA | 0.09 | 0.05 | 0.64 | 0.38 | CEthreader | -----------------------------------TDTREILEENNELHYLNRLKTYQYLLKNEPIHVYYGSIDAYAEGIDKLLKTYA-------------------------DKNLTASLCHY-----STQADKDRLTEHDDPADVQTRLDRKDVYYDQYGKVVLIPFTIET---QNYVIKLTSDSIVTEFDYLLFTSLTSIYDLVLP----------- | |||||||||||||
4 | 5u55A | 0.08 | 0.05 | 0.61 | 0.55 | EigenThreader | ----RTLAVGKAHLEAATQVYFDGLEHLQNVAQYLAIPLSEFFVGQTQ-----------------SDLDDGVK----IARRNGPGLMALRLLHSDDEQPLRLNGG------HGSREIVYVTRGAVDNDELKEDVLNEIFILPNV----------------PHSFTNHVG-------GAKSEIIAINYG-------------------------------- | |||||||||||||
5 | 1vt4I | 0.14 | 0.13 | 0.89 | 0.46 | HHpred | KPYENCLLVLLNVQ-NARFKQVT-DFLSAATTTHISLD-----HHSMTLTPDEVKSLLLKYLDCRPQDLTTNPRRLSIIAESIRDGLAT----WDN-WKHVNTTIIESSLNVLEPAEYRKMRLSPSAHIPTDVIKSDVM------VVVNHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHSIVDHRMVFLDF--RFLEQKIRHDSTAWNASG---- | |||||||||||||
6 | 5xviA | 0.12 | 0.07 | 0.62 | 0.43 | MRFsearch | -----------------------------------------------PHEPEFEQAYKELASTLENSTLFQKNPEYRKALAVVSV---------------------------PERVIQFRVVWEDDAGNVQVNRGFRVQFNSVNLSILKFLGFEQIFKNALTGLN----------MGGGKGGSDFDPKGDNEIRRFCVSFMTELCKHITGREVGFLFGQY | |||||||||||||
7 | 2pvoA | 0.14 | 0.06 | 0.45 | 0.38 | FFAS-3D | -------------------------------------------------TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLALGSPLCPCYEDKEAEVKNTFWN----------------CPC--------------------------VPMRERKE------CHCMLFLTPDNDFAG-----------------------DAQDIPMETLEEVKASM | |||||||||||||
8 | 4gkpA | 0.07 | 0.06 | 0.85 | 0.53 | SPARKS-K | --RLFANIIEDEISEKLIVNDESIEDMKYKFTKLISHQNKDLFKED---LHVYIDFCLKNLFSVGSSNIPNTFEKLLAFFKNNYFDKFVITLQYEESTSLGSTLITKLKKKYSNGIGLSKFQFFCLQDIEPIPIDFYFIEIYQIYPILKREIVLKKIFHDTKSAF----------------VFQIDHSA------EVYDILKLSSHLSFIRNPK------ | |||||||||||||
9 | 3wqtA | 0.14 | 0.13 | 0.95 | 0.64 | CNFpred | ----YYVSIDIGS---SSVKTIVGEKFGINVIGTGQT--TSGIKNGLIDDFDIARQAIKDTIKKASIASGVDIKEVFLKLPIIGTEVYDESNEIDFDTEINGSHIEKVLEGIREVINVFPIRFIVD-LIARHSLKVEAGVIAIQKSILINMIKCVEACGDVLDVYSDAYNYGSILT-EDVTQVAFYERGELVDAD-GRDITDDIAQGLNTSTAEKVKHQY | |||||||||||||
10 | 6k31A1 | 0.08 | 0.06 | 0.78 | 0.67 | DEthreader | ------CAADRPGATLVLDQ------HVAGLPIPKKAVPRDVFAVLAVAFVSL-L--LRPVV-VPESAERLAPESWTGHTGSYSANLEEEHSGGA-LAFPATQAHKP-TGGKSDDITSSIVKVVAAGRNPLHYLEFSSEG-TKSPFNALPPVYDLNAALLSYALGGYDGWARIYR-LFER------------------------Q--SAIAA---LPSLA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |