>PF04529 (381 residues) PGPGWRDAALIMHNGMVREHMFYHPDVAEIVRRMIPPPPDAEEGCVFASELAFYTSGRCN RASSVFSIYWQNNSEIVYAMTGITHCIKIVVECGQVGSDSVERQFYDSPGIYLIRVSDGT VVPRNVVWPGTSVRWSKEVGIRVVQRRVTVARAFVSLFRNYLFWTKQPFSEDLCPCPPDV EDRLFPLLNLSRGDIEVFDKKVCCAYKRLQKNDLPRAGRRLLDHCVTLAASKKILLLDLP RLENFFLAQVCLYELDEDEVGEELLGMLCGKSTESDSTFLLHRKTMKVAACVAFILNCFY KHQERLPEVNNRVDECDLAVIALRRYYRHHAGIQTRAIAMAQKFLTDYSESFSPFKSFSR MEVQVPLDAAVTRKQLVAVLR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PGPGWRDAALIMHNGMVREHMFYHPDVAEIVRRMIPPPPDAEEGCVFASELAFYTSGRCNRASSVFSIYWQNNSEIVYAMTGITHCIKIVVECGQVGSDSVERQFYDSPGIYLIRVSDGTVVPRNVVWPGTSVRWSKEVGIRVVQRRVTVARAFVSLFRNYLFWTKQPFSEDLCPCPPDVEDRLFPLLNLSRGDIEVFDKKVCCAYKRLQKNDLPRAGRRLLDHCVTLAASKKILLLDLPRLENFFLAQVCLYELDEDEVGEELLGMLCGKSTESDSTFLLHRKTMKVAACVAFILNCFYKHQERLPEVNNRVDECDLAVIALRRYYRHHAGIQTRAIAMAQKFLTDYSESFSPFKSFSRMEVQVPLDAAVTRKQLVAVLR | |||||||||||||||||||
1 | 1tq6A | 0.07 | 0.05 | 0.69 | 0.70 | DisCoVER | KIIISSVLNVAV---------TGETGS--GKSSFINTNEEEGAAKTVEMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMFYDFFIIISAIAKAISAEFYFVRTKVDCVFRENGIAEPIFLLSNKNVCHYDFPMDKLISLPIYKRHN--F-MVS--LPNI----TDSVIEKKRQFLKQRIWLEGFDLVN-I-IP---S--LTF-L----LDSDLETLKKSMKFYRT--VFGVDSLVEAMI-KSPAVFKPTIQER--LSRYIQEFYL-LPK--NSFLKEIFYLKYYFLDMVTED--------AKTLL----------------------------------------------------------------------- | |||||||||||||
2 | 3o0yA | 0.05 | 0.03 | 0.62 | 0.67 | DEthreader | -------------------AMYGLSQDIGQ-EF-------------ELLSISNT---IAGIKLTQMALTRYGEPNFNIGYIDTWMGL-------------------------------------------------NDQ--------------KQLGDSELSP----TQ---IHQIGLDEVARISGVMEILYVRMVALNFLYRLLSDIN-EVKSFPEVQGAPGNLRDMKANP---------------TL-YHEAGHHWQALSEQVAYELGMYENDPFGDLGRLQAELFRAVRLVVDTGLHDKRWTREQISYMSEQTG--TAESDVVAEIE--RYMAWPGQALGYKLGMLKILSRFHVVLLNGA------------------ | |||||||||||||
3 | 1vt4I3 | 0.05 | 0.05 | 0.98 | 0.77 | CEthreader | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------- | |||||||||||||
4 | 3txmA | 0.12 | 0.08 | 0.73 | 0.72 | EigenThreader | ------------------------NDEERIQGILQQGELYKQEGK--AKELADLIKVTRPFLSS-----------------------------ISKAKAAKLVRSLVDMFLDM----------DAEVQLCKDCIEWAKQEK----RTFLRQSLEARLIALYFDTA-------LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC------PGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML----------------GQSD---DVNQLVSGLAIT---YSGRDIDAMKSVAEASHKRADFQAALKEYKKELAEDVQAHLGTLYDTML | |||||||||||||
5 | 1vt4I | 0.15 | 0.09 | 0.60 | 0.42 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------FEDAFVDNFDCKD---VQDPKSILSKEKDAVSTLRLFWTLLSKQEVQKFVEEVLRINYKFLEQRQPSMTRMYIEQRDRLYNDNQVFAKNVSRLQPYLKLRQALLELRPANTWVALDVCLSYKVQDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSLRRLLKSKLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLTTHISLDHTLTPDEVKSLLL | |||||||||||||
6 | 4zlhA | 0.13 | 0.06 | 0.45 | 0.37 | MRFsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRAEDMFNQLTDETDFRIGALQQLLQIAERLVKLGKDKQRVEIAHFYCELALQKKGAAADKNSARVSIMMGRVFMAKGEYAKAVEMLQTCYQQL----GKTAEWAEFLQRAVDAELMLADIIEARD----------GSEAAQVYITRQLQRH--PTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMV---------------- | |||||||||||||
7 | 4gpkA1 | 0.14 | 0.06 | 0.43 | 0.63 | FFAS-3D | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RDVEEDVKGKLDEWLNALVHLDKQ-QVERIYEELQGEMKH-----VLDFEIINYYKLLYTRYLIRDISALEEELDKLKKVYKKYSPFQKLLYMYGRGLLCCLDGLDYLLKTEVMAK--EQGYHETGLYYNIALAYTH--LDIHHLAIHFVNMALEGFRSEYKFRNI----------------INCQILI- | |||||||||||||
8 | 4m0mA | 0.12 | 0.11 | 0.94 | 0.56 | SPARKS-K | KDPIPGTYIYNPKDNS---KILISQTITNAIQKLTGNL--AGEGIEHLFEAVLYLNDIIGKLPETVNLHGFSRGADTCRANLLYQLYNLFLIDQVPGPGKRDDHSYTVPPSTLLHEYRPGFDPQHIADPEKTK-----VVVKRVTEDPNTNHTAILLNDDNRFCRELPSVGISPPIIARVGDKKEEVRTHSELSPEKRFELLCGKEWGYAKLTKKYHERSILSKREDYVQDSRLFV-------NQEHRELFKQLY------PKSFNWFFEKNHGGQTKKEEVIVELKSLSEYEHFFSSLAKHAGTLPEPKSSFGQPQHSLTSIANYYHYHCDEKSSTNESVKNLLLERVKEKPDSEAIKHLEEKGHISPNARCEQVKAALR | |||||||||||||
9 | 4xgcC | 0.12 | 0.10 | 0.81 | 0.74 | CNFpred | -------------------------AVETLVFGLVEDNAEVEQ-QCTMKQLKSWYTNNFDSKRRQLVVILPD-QDLILILSAHCLPFVLVLGVAT-----AMTAVH-------------GTLPYHVS---------SKIRLRVFQTQ-AAPTGLNEVLDKVLLSPKY-----AFHLSGKTFKFLTHIFLYYDFSIHGFIQGFKYCLMEHFFFALCTDYSKALGRIKQLT---------HEDMETIRRLPSFRPYVEQINDCKRIIAVLTDDDYLKKKLPQLLRDCLLHFLLFRCSLEFLTELVGDLPRCPLGKLRRELYVNCLNRAII-----STPEYKECLQMLSFLSKVAKVNRALERTEQFLVEEILELGEACTAVLR | |||||||||||||
10 | 6pzkA | 0.06 | 0.04 | 0.72 | 0.67 | DEthreader | --GV--------SEYFFR--AMAVKINCNET--VVSLTG-------R-MF--AMQPGMFRVQILAE----------AENILQFFPESTLFNFSCSLDH-VQSLWLHLGGWEAILITAIDISSLLL-------AGIGHKLKTETFKTAIKKVLRVGPWINTILD------------DFK-VSLESIGSLTSLIFRNVWLYNQIAYDILKVLKHLKTFFN-LDNIDTA--L--------------TL-YMN--LP----LFGG-GDPNLLYRSFYRRTPDFLTEADPQALGQAKITSEINRLAVTESAHYTEDLNIMYPHGLR--Y--------PFYKAEKIV--N----------------LISGTKIDRAMMRKNILRIRS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |