>PF04285 (419 residues) HFIDRRLNGKNKSAVNRQRFIRRYKKQIKQAVSDAVSKRSIQDVDKGESISIPTKDIGEP HFHQGQGGKREMVHPGNDQFVSGDKIDRPKGGGSGQGGGEGQASDQGEGADDFVFQISKD EYLDLLFEDLELPRLQKTQLNQLMEMKTYRAGYTSNGVPANINVVRSLQNSLARRMALQA GKKRQLRELEERLAQLTSAPNDHFAEIAQLEKEIRELKRRIEAVPFIDTFDLKFNNFVKR PVPSSQAVMFCLMDVSGSMDQATKEMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVD EHEFFYSQETGGTIVSSALKMMNDIINERYPANQWNIYAAQASDGDNWADDSPQCREILM RDIMPRVRYYSYIEITTRAHQTLWHEYESVAGQFPHFAMEHIRKVEDIYPVFRELFKKQ |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | HFIDRRLNGKNKSAVNRQRFIRRYKKQIKQAVSDAVSKRSIQDVDKGESISIPTKDIGEPHFHQGQGGKREMVHPGNDQFVSGDKIDRPKGGGSGQGGGEGQASDQGEGADDFVFQISKDEYLDLLFEDLELPRLQKTQLNQLMEMKTYRAGYTSNGVPANINVVRSLQNSLARRMALQAGKKRQLRELEERLAQLTSAPNDHFAEIAQLEKEIRELKRRIEAVPFIDTFDLKFNNFVKRPVPSSQAVMFCLMDVSGSMDQATKEMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKMMNDIINERYPANQWNIYAAQASDGDNWADDSPQCREILMRDIMPRVRYYSYIEITTRAHQTLWHEYESVAGQFPHFAMEHIRKVEDIYPVFRELFKKQ | |||||||||||||||||||
1 | 2i6qA1 | 0.14 | 0.06 | 0.42 | 0.49 | DisCoVER | ----------------------------------------------------------------------------------------------------------------------------------SKIQIQR----------------------------------------------------------------------------------------------------------SGHLNLYLLLDCSQSVSENDFLIFKESASLMVDRIFSFI-NVSVAIITFASEPKVLVISSLENAYHGTGTNTYAALNSVYLMMNNQMAWQEIRHAIILLTDGKSN-MGG-SPKTAVDHIREILYLDIYAIGVGKLDVDELNELG--SK--KDERHAFILQDTKALHQVFEHMLDV- | |||||||||||||
2 | 1t3tA | 0.05 | 0.04 | 0.67 | 0.67 | DEthreader | ---------------L---VMEGSAVGRYFAYDFHAGAKPKGNPALAGGIGN-I-RADHVQKG--------FIHDVAMELSDGG---FEDILSDESQER--KRAPYAVI---------RT-TG-MVA-----------------------------------RDQMVGWQVPVAD-----SIGERAVAASARWEAGLYDAVKG-TIPVGKDSSLVISA-----TLTPQLSGGLNVKLFDEIAPYIRPKVAVLREQ--------G--VN-SHVEMAAAFH-RA-GFDAIDVHM---SD------------------LLG-GRIGL-GN----F---HALVACGGSGGWAKSILFHVRDEFETFFHRPQTLALGVNGC---Q-MMSNLRELIPGSEPSLL-VSHGEGPNMMPHPEPWMRIN | |||||||||||||
3 | 4cn8A | 0.12 | 0.11 | 0.85 | 0.52 | CEthreader | VLFDDSSSIQYDNKENYQMMKDFVKELVDSFTTVGVGSQ-FGVVQFSQGVKTAFPLNKFKTKEDIKKGIQDMVPRNGGQTEIGTGLKHVRENSFSGAEGGGNPDKQKIVILMTDGKSNAGAPPQHEAHK-----LKAEGVTVI-----------AIGIGQGFVKTELEQIATMKNYVLTTNSFSELSTLLKLVIDLACE--------------------------------------VCVVDCAGHADIAFVFDASSSINANNYQLMKNFMKDIVDRFNKTGDGTQFAVVTFADRATKQFGLKDYSSKADGQTAIGDGLENARLEV---FPNREVQKVVILLTDGQNNGHK--SPEHESSLLRKEGVVIVAIGVGTGFL----KSELINIASSEEYVFTTSSFDLSKIMEDVVKLACMS | |||||||||||||
4 | 6kxkA | 0.07 | 0.05 | 0.80 | 0.88 | EigenThreader | -------GTSSMADIGSTNDALDYYLKSKG-------------FNGLFSASNLRDRDVLSKQKEKD--ATLSERSEVVLNSLAPKWYHFETVDTKFQNSREEMLKLDEQQFLGEATCALSEIIT------KGFAPQAQPKISTEIVFRCSNLESKDLFSVGSKD----------------------------------SSNGKHSDLEKLHLAG---------QGGAGQNKVLKSQLFVDKHHTGFELNFMVAIFTASNGNPYQRAIMDVGEVLQFYD----SDKRFPAWGFGHCFNLNGSTSALFNGPTLFGPVINAAAMIASASLAQGSR----KYYVLLIITDGVITDLQETKDALVSASD--LPLSILIVGV-GGADFKEMEILD---ARDIVQFVALVVQALLAELPSQFLTYM | |||||||||||||
5 | 6fpyA | 0.14 | 0.11 | 0.75 | 0.52 | HHpred | ------------------------KVTAWKQYRKAAISGLVRASGRTFTIHLTVNPQSKVTFQLRNHMQYEIVIKV-----------KP-----------------KQLVHHFEIDVDIFEPQGIS--KLDAQASFLPKELAAQTIKKS-----FSGKKGHV---------------LFRPTVSQ------QQSCPSTSLLNDVSRDK-I-CDL--LVANNHFAHFFAPQNL---------TNMNKNVV-FVIDISGSMRGQKVKQTKEALKILGD-MQP-GDYFDLVLFGTRVQSWKASEQDFVRGSLDEATNLNGGLLRGIEILNQVQLSNHAS-ILIMLTDGDPTETDRSQILKNVRNAIRGRFPLYNLG-FGHNVD---FNFLEVMSMENNGR-AQRIYEDHDATQQLQGFYSQ- | |||||||||||||
6 | 4cn8A | 0.12 | 0.09 | 0.76 | 0.37 | MRFsearch | ------------IQYDNKENYQMMKDFVKELVDSFT------TVGVGSQFGVVQFS----------------------------------------------------QGVKTAFPLNKEDIKKGIQDMVSFSGAEGGGNPDKQKIVILMTDGKSNAGAPPQHEAHKLKAEGVTVIAIGIFVKTELEQIATMKNYVLTT--NSFSELSTLLKLVIDLACEVC--------------VVDCA---GHADIAFVFDASSSINANNPNNYQLMKNFMKDIVDRFNDGTQFAVVTFADRATKQFKADIKGPSIIGQTAIGDGLENARLEVFP---NREVQKVVILLTDGQNGHKSPEHESSLLRKE---GVVIVAIGVGT----GFLKSELINIASSEEYVFTTSSFDLSKIMEDVVKLAC-- | |||||||||||||
7 | 4hqlA1 | 0.14 | 0.06 | 0.42 | 0.89 | FFAS-3D | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YSEEVCNEQVDLYLLVDGSGSIGYPNITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELITELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVP--NSKYRALEVANKLKQRNVRLAVIG-IGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAK- | |||||||||||||
8 | 2ok5A3 | 0.14 | 0.06 | 0.48 | 0.79 | SPARKS-K | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YDTPQEVAEAFLSSLTETIK-----------------------------RKIVLDPSGS-----MNIYLVLDGSDSIGASNFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPIWVKVSEADSSNNYEGTNTKKALQAVYSMMSWVPPWNRTRHVIILMTDGLHNMGDPITVIDEIRDLLREDYLDVYVFGVGPLVNQ---VNINALASKKDEQHVFKVKDMENLEDVFYQMIDES | |||||||||||||
9 | 4cn8A | 0.12 | 0.10 | 0.80 | 0.85 | CNFpred | -------------QYDNKENYQMMKDFVKELVDSFT---TVGV---GSQFGVVQF-GVKTAFPLNKFKTKEDIKKGI------QDMVPRNGGQ-----------------------TEIGTGLKHVRENSFSG-AEGGGNPDKQKIVILMTDGKSNAGAPPQHEAHKLKAVTVIAIGIGQFVKTELEQIATMKNYVLTT---SFSELSTLLKLVIDLA-----------------CEVCVVDCAGHADIAFVFDASSSINANNPNNYQLMKNFMKDIVDRF-DGTQFAVVTFADRATKQFAIDKVTPSIIGQTAIGDGLENARLEVFPNR---EVQKVVILLTDGQNNGKSPEHESSLLRKE---GVVIVAIGVGTG----FLKSELINIASS--EEYVFTTSSFDMLSKIMEDVVKLA | |||||||||||||
10 | 2vz8B | 0.08 | 0.06 | 0.75 | 0.83 | DEthreader | SLEVRLLSAFEVSLIASG------LRLRGYDYGP---Q-VLESDLEGNRGRLQNSWVSFLD--------SIRIDPVTH-RQK-LYTL--TTQ------------------GGALF----SSV-APRRPQLL-VCSPHYALPSCRLLLHAVPIVYTTAYYSLVVRGRMESVLIHFTTSFEQHVLR-----------------------------------HTAGKGVDLVLNLIILDLFEEG-FCPPHKSYVITG-----------GLGGFGLQLAQWLR-LRGAQKLVLTSRS-----AQVR-VLVST-S-NASSLDGARSLITEATQLGPV----GGVFNLAMVQDVSKPYSGTANLDRVTRCPELDYFVIFSSSGQANYFANSAMERICERRPGLAVQWIGVVLEPQRIASCLEVDL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |