>PF04143 (311 residues) RGRFCLTGAYRDLYLTKDNRMFIAVILAIAVQSIGVFLLYSFGLIQFKEGNFMWLATIIG AFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALIAYMVSSAMMKGGVLQSLNDSLQSYTV NHVTIYDSFGVSPWVFVILLSVITGYFVWKQLRKPSVKIPSLKQKKTGIAHVLFEKRWHP FVTAILVGCIAILAWPLSEATGRMYGLGVTTPTANILHFLVSGDVSYINWGVFLVLGIFL GSLIAAKGSGEFRWRTPDAKTTIFSFIGGILMGIGASLAGGCSIGNGLVGTAIFTWQGWI ALPFMIFGTWT |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RGRFCLTGAYRDLYLTKDNRMFIAVILAIAVQSIGVFLLYSFGLIQFKEGNFMWLATIIGAFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALIAYMVSSAMMKGGVLQSLNDSLQSYTVNHVTIYDSFGVSPWVFVILLSVITGYFVWKQLRKPSVKIPSLKQKKTGIAHVLFEKRWHPFVTAILVGCIAILAWPLSEATGRMYGLGVTTPTANILHFLVSGDVSYINWGVFLVLGIFLGSLIAAKGSGEFRWRTPDAKTTIFSFIGGILMGIGASLAGGCSIGNGLVGTAIFTWQGWIALPFMIFGTWT | |||||||||||||||||||
1 | 6leoA | 0.34 | 0.32 | 0.94 | 1.33 | DEthreader | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSPLPTISSVLGLNPWIPALVIAALFILWAFGTK-TT---S-RE-------------TKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNS--PLNWEGLEIVGIILGAGVAAAVAGEFKLRMPNPVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
2 | 6leoA | 0.34 | 0.32 | 0.94 | 1.33 | DEthreader | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSPLPTISSVLGLNPWIPALVIAALFILWAFGTK-T--TSR------------E---TKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNS--PLNWEGLEIVGIILGAGVAAAVAGEFKLRMPNPVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
3 | 6leoA | 0.34 | 0.32 | 0.94 | 9.97 | HHpred | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSAGPTISSVLGLNPWIPALVIAALFILWAFGTKTT------------------SRETKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNSP--LNWEGLEIVGIILGAGVAAAVAGEFKLRMPKNVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
4 | 5tsaA | 0.08 | 0.05 | 0.66 | 0.94 | DisCoVER | HVG---------------YAVLGGAAGF-AATALGALMA----LRAISARQD-AMLGFAAGMMLAASFSLIPG-LDAAGTIVGPGPAAAAVVALGLGLGVLLMLVWLFVLTIILH-----------------------------NLPEGMAIGV--S-FATG--------DLRIGLPL-TSAIAIQDVPEGLAVALALRAVPIGRAVL--------------------VAVA-S---GLMEPLGALVGVISSGFALA------YPISMGLAAGAMIFVVEV-----------HETATV-GLMAGFALMMD- | |||||||||||||
5 | 6leoA | 0.34 | 0.32 | 0.94 | 0.83 | MRFsearch | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSAGPTISSVLGLNPWIPALVIAALFILWAFGTK------------------TTSRETKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNSP--LNWEGLEIVGIILGAGVAAAVAGEFKLRMPNPVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
6 | 6leoA | 0.34 | 0.32 | 0.94 | 4.23 | SPARKS-K | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSPGPTISSVLGLNPWIPALVIAALFILWAFGTKTTSRE------------------TKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNSPL--NWEGLEIVGIILGAGVAAAVAGEFKLRMPNPVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
7 | 6leoA | 0.34 | 0.32 | 0.94 | 2.21 | MAPalign | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSAGPTISSVLGLNPWIPALVIAALFILWAFGT------------------KTTSRETKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNSP--LNWEGLEIVGIILGAGVAAAVAGEFKLRMPNPVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
8 | 6leoA | 0.34 | 0.32 | 0.94 | 1.77 | CEthreader | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKSAGPTISSVLGLNPWIPALVIAALFILWAFGTKTTSRET------------------KFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNSP--LNWEGLEIVGIILGAGVAAAVAGEFKLRMPKNVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
9 | 5y78A | 0.11 | 0.10 | 0.85 | 0.75 | MUSTER | ---NFIFNIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLGLRTKPNVSKLIKALIWPSLGHTLGHAAT----CMSFSLVAISFVKSAEPVFGAVGSALVL-FHPLTYLTLVPIVSGVALSAATELTFTWTGFITAMISNVAFVTRNITSKFTMVDFKNEKTL----------IAQNTYALITIISFFMELPFALLMEGFPPL-----------------VSAIAGVSKAKLFGSIMFCSLFYHLYN---------VSYLCLDNVSPVSFSIGNTIK---RVIIIFGSILVFTRLNFIGSTIAIIGTML | |||||||||||||
10 | 6leoA | 0.34 | 0.32 | 0.94 | 9.18 | HHsearch | RGRICFNSAFRDVLLFKDNYLFKLAVFTLALEMILFVLLSQVGLMQMNPKPLNLVGNIIGGFVFGLGMVLAGGCASGVTYRVGEGLTTAWFAALFYGLGAYATKSGAFSWWLSWVGQFKGAGPTISSVLGLNPWIPALVIAALFILWAFGTKTT------------------SRETKFNWKIASVCLALVAGLGFITSTLSGRKYGLGITGGWINLFQGFLTNSP--LNWEGLEIVGIILGAGVAAAVAGEFKLRMPKNVTYLQVGIGGLLMGIGAVTAGGCNIGHFLTGVPQLALSSWLASIFFILGNWT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |