>PF04129 (483 residues) YIKESQNIASLHNQITACDTILERMEQMLNGFQSDLGSLSAEIQTLQEQSIAMNVKLKNR QAVRGELSQFVDEMAVNERMINIVLEAPVTDRQFLEQLHELNHKIRFVKEQAFKDALSCR DVEDILEKLKLKAIFKIREFILQKVNQMKKPMTNYQLQQNAMLKARFFYEFLLANERHVA KEVRDEYVDTMSKVYFSYFKGYINRLMKLQVLILNVLQKYQDDFVQTCFVKMLQCHTELG HAPGITYRLVAYQQDSLEAVIQGVIDGINVEHSKMEHTFESLFRSQHFALLDNCCREYLF VCDFFMVSGSNAQDLFTNLLGKTLSMFLKHMDTYTNECYDSIAVFLCIHIIQRYRVLMHK RSVPALDKYWETLFEMIWPRIKHILEPKSRITRRYAEYSGAIVNLNETFPDERVNRLLLK LQSEVENFILRMAAEFPSRKEQLIFLINNYDMMLNVITECTSEDSREAESFRQLLDARTQ EFI |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YIKESQNIASLHNQITACDTILERMEQMLNGFQSDLGSLSAEIQTLQEQSIAMNVKLKNRQAVRGELSQFVDEMAVNERMINIVLEAPVTDRQFLEQLHELNHKIRFVKEQAFKDALSCRDVEDILEKLKLKAIFKIREFILQKVNQMKKPMTNYQLQQNAMLKARFFYEFLLANERHVAKEVRDEYVDTMSKVYFSYFKGYINRLMKLQVLILNVLQKYQDDFVQTCFVKMLQCHTELGHAPGITYRLVAYQQDSLEAVIQGVIDGINVEHSKMEHTFESLFRSQHFALLDNCCREYLFVCDFFMVSGSNAQDLFTNLLGKTLSMFLKHMDTYTNECYDSIAVFLCIHIIQRYRVLMHKRSVPALDKYWETLFEMIWPRIKHILEPKSRITRRYAEYSGAIVNLNETFPDERVNRLLLKLQSEVENFILRMAAEFPSRKEQLIFLINNYDMMLNVITECTSEDSREAESFRQLLDARTQEFI | |||||||||||||||||||
1 | 5yfpA | 0.07 | 0.06 | 0.78 | 1.00 | DEthreader | -----------------------------------------------------ES-NKKLLWNTLDELLKT-VSLDEISLNQLLECPIREKNLWMENQLNLLLKAFQAIGSDGNENLREISGLKQRLQFYEVIFLNRIVEEMQKKFSNIRGQDDQMIRILTTLLIFSPLICKEISQKSYQAIVENWNVSIQPVYMELWTKKISQ-LQ--G---I--D--TN-D-EKMNELSLSQLLNEWDTF---RKERKTND--INPVF-----------------KNSFSLLTECLQTMRQECIVYQNFVEVFHIS-TVKV-MQ--SDREAAVIETQLVS--R--IF-Q-PIVTRLSSYFVELVKAEPTAPLTFYLENEIKSLESSNHEFLSATRTEILPGILDLPVGLKNSEDLTEYESIELMNSSFRKLSIAAT-RSIT--D---YMETISLLVNSNWLTEMLSM-DGI-FDTSLQNVKKVFDVEKEYT | |||||||||||||
2 | 5yfpA | 0.07 | 0.05 | 0.74 | 1.00 | DEthreader | ---------------------------------------------------------KLLWNTLDEL-LKTV-SLDEISLNQLLECPIREKNLWMENQLNLLLKAFQAIGSDGNNLRESGKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDDQMIRILTTLLIFSPLIFKEISQKSYQAIVENWNVSIQPVYMELWTKKISQ-LQ---G--ID-TN-DEKMNELS------------------ERKTNDIN---P------------------VFKNSFSLLTECLQTMRQECIVYQNFEVFFHISDTVKV--MQ-SDR-EA--AVIETQLVSR-IFQP--IVTRLSSYFVELVKAEPTVAPTFYLENEIKSLESSNHEFLLSALPGILDLPVGLKNSEDLFFATDEGYESIELMNSSFRKLSIAATRSI-TDYMETISLLVNSNWLTEMLSMDGI--------F--DTSLQNVKKVFDEG | |||||||||||||
3 | 5yfpA | 0.13 | 0.12 | 0.91 | 5.75 | HHpred | LLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIRE-KNLNQLNLLLKAFQAIGSYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDISMIRILTTLLIFSPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDT---ND-E----KM-NE------LSLSQLLNEWDTFRK----ER-KTND-----------INPVFKNSFSLLTE-CLQTMRQECIVYQNFVEVFFHISSKEAAVIETQLVSRIFQPIVTRLSSYFVEPTVAPALTFYL---ENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEGIPGILDLPVGLKNSEDLFQFASIELMNSSFRKLSIAATR--------SITDYMETISLLVNSNWLTEMLSMDGFDLQNVKKVFDVEKESYASFLL | |||||||||||||
4 | 5yfpA | 0.07 | 0.06 | 0.81 | 1.04 | DisCoVER | --------------------------------------------------------------TL-DELLKT-VSLDEISLNQLLECPIRENLPWMEQLNLLLKAFQAGSDGNEVEYNLRISGLKQRLQFYEKVFLNRIVEEMQKKFSNIQDIHDQMIRILTTLLIFSPLLFCKEIQKSYQAIVENWNVSIQPVYMEWTDINPVFKN---SFSLLTEC----LQTMRQECIVYQNFVEISSKHNFEEYIKHFNDPDAPPILLDTV-KVMQSDREAAVIETQLVFQPIVTRLSSYFVELVK-AEPTVAPALTFYL-EN--EI--KSLESSNHELLSAVTRMNGELPDLPVGKNSEDFQFAKRSKDTYE-SIELMNSSFRKLSIAATRSI--TDYMETISLLVNSNWLTEMLSIFDTSLQNVKKVFDVEKESYASFLLR--DTMPKLTFVYGV-SNIIEN-RQNLENILLA--YTSHE--IETLV- | |||||||||||||
5 | 5yfpA | 0.12 | 0.11 | 0.91 | 0.97 | MRFsearch | --SLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIREKNMENQLNLLLKAFQAIGSDNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGSHDQMIRILTTLLIFSPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDTN-----------------------------DEKMNELSLSQLLNEWDTFRKER--KTNDINPVFKNSFSLLTECL-QTMRQECIVYQNFVEVFFHISDREAAVIETQLVSRIFQPIVTRLSSYFVELVEPTVAPALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEILPGILDLPVGLKNSEDLFQFESIELMNSSFRKLSIAATRS--------ITDYMETISLLVNSNWLTEMLSMDDTSLQNVKKVFDVEKESYASFLL | |||||||||||||
6 | 5yfpA | 0.12 | 0.11 | 0.91 | 0.99 | SPARKS-K | LLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIREPWMENQLNLLLKAFQAIGSDGNEEISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDIQMIRILTTLLIFSPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQL--------QGIDTNDEKMN-------ELSLSQLLNEWDTFR----------------KERKTNDINPVFKNSFSLLTE-CLQTMRQECIVYQNFVEVFFHISSREAAVIETQLVSRIFQPIVTRLSSYFVELAEPTVAPALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEQVPGILDLPVGLKNSEKRSMDIKIELMNSSFRKLSIAATRS--------ITDYMETISLLVNSNWLTEMLSMDIFDTSLQNVKKV--FDVEKESYA | |||||||||||||
7 | 3s4wA | 0.07 | 0.07 | 0.99 | 1.08 | MAPalign | -LQEIPPLVYQLLVLSRRSVLDGIIAFFRELDKQHREEQADELYHVEGTVILHIVFAIKELGRELLKHLPSKCLCP-FSIALLLS-LTRIQRFEEQVFDLLKTSVVKSFKDLLQLVPQRTCVSTMILEVSVHVTQGLIEFGFILMDSYGPKKILKMTNQHACKLGANILLETFKIHEMIRQEILEQVLNHFRDSLILVLRKADARKSAVAGFLLLLKN-FKVLGSLPSSQCTQSIGVTQVRVDVHSRYSAVANETFCLEIIDSLKRSLGQQADIRLMLYDGFYDVLASSIMQTLFSQLKQFLGACVLTQIFLQEPLDHLLSCIQHCMLESITVRMFELDDFICACLIMGVCEVLMEYNFSISKFEEILSLFTCYKKFSDILSEKKVSDSLLLKFVSDLLTALFSVLRSS-GEFMHYAVNVTL-QKIQQLIRTGH-VSGPDGQPDKIFQNLCDITRVLLWRYSSISLLCLEGLQKTFSVVLQYQ | |||||||||||||
8 | 2pftA | 0.10 | 0.08 | 0.79 | 0.69 | CEthreader | -------------------------------------------------------------------DHVISYYHVASDTEKIIREGTGRLEEYLGSMAKIQKAVEYFQDNSPDS-----PELNKVKLLFERGKESLESEFRSLMTRHSKVVELEHLPESVLRDVVRISRWLVE--YGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSLDVETDAYIHCVSAFLAQSEYRLLMEIIPEHHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQG--------------------TAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQES------SEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQKTAERSYREHIEQQIQTYQ | |||||||||||||
9 | 5yfpA | 0.11 | 0.11 | 0.93 | 0.99 | MUSTER | LLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIREPWMENQLNLLLKAFQAIGEYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDIQMIRILTTLLIFSPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDTND--------------------------------EKMNELSLSQLLNEWDTFRKERKTNDINPVFKNSFSLLTECLQTMRQECIVYQNFVEVFFHISSREAAVIETQLVSRIFQPIVTRLSSYFVEKAEPTVAPALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEQVPGILDLPVGLKNSEDLFQFAKRSMDIKDTDESIELMNSSFRKLSIAAITDYMETISLLVNSNWLTEMLSMDGI-FDTSLQNVKKVFDVEKESYA | |||||||||||||
10 | 5yfpA | 0.13 | 0.12 | 0.91 | 6.16 | HHsearch | LLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIRE-KNLNQLNLLLKAFQAIGSYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDISMIRILTTLLIFSPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDT---ND-E----K-MNEL------SLSQLLNEWDTFR-----KERKTND-----------INPVFKNSFSLLTE-CLQTMRQECIVYQNFVEVFFHISSKEAAVIETQLVSRIFQPIVTRLSSYFVEPTVAPALTFYL---ENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEGIPGILDLPVGLKNSEDLFQFASIELMNSSFRKLSIAATR--------SITDYMETISLLVNSNWLTEMLSMDGFDLQNVKKVFDVEKESYASFLL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |