>PF04100 (407 residues) PDFNAVDYINYLFPTEQSLANIDEVVNRMRLKIRRLDDEIRSVVRGQTTAGQDGREALKE AQKAIQELFKRIKDIKEKADKSEQMVKEITRDIKQLDHAKRHLTSSITTLNHLHMLVGGV DSLESMTRRRQYGEVANLLQGVVNVMEHFQKYMSIQQIRQLGDKVRKIQSELGVQILADF EESFANQGSRPIGNMRELAEACLVVKVLDPKVKKDLMKWFVTLQLQEYMVLFQESQDVAW LDKIDRRYAWLKRAQVEFEEKYGHMFPRDWEVSERICVEFCNVSRTELGKIMQKRESEID VKLLLFAIQRTTNFETIIAKRFSGVTLQPPGESSSAGNVAVAEESTVSTNPFEMEEEPAE MKTLAKPKLSSFQGIISQCFEPHLHIYIQSQDRNLSDLINRFVEAFK |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PDFNAVDYINYLFPTEQSLANIDEVVNRMRLKIRRLDDEIRSVVRGQTTAGQDGREALKEAQKAIQELFKRIKDIKEKADKSEQMVKEITRDIKQLDHAKRHLTSSITTLNHLHMLVGGVDSLESMTRRRQYGEVANLLQGVVNVMEHFQKYMSIQQIRQLGDKVRKIQSELGVQILADFEESFANQGSRPIGNMRELAEACLVVKVLDPKVKKDLMKWFVTLQLQEYMVLFQESQDVAWLDKIDRRYAWLKRAQVEFEEKYGHMFPRDWEVSERICVEFCNVSRTELGKIMQKRESEIDVKLLLFAIQRTTNFETIIAKRFSGVTLQPPGESSSAGNVAVAEESTVSTNPFEMEEEPAEMKTLAKPKLSSFQGIISQCFEPHLHIYIQSQDRNLSDLINRFVEAFK | |||||||||||||||||||
1 | 5yfpF | 0.09 | 0.08 | 0.86 | 4.37 | HHpred | LDPLSFDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQMNDKLETSIDEIANIQGMQDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELITERKFFKVLQNLDSLEKL--YLQEFKNFQFLIEIYNSIPFLQKVTKDECINLIRNSLNLLGKNEFFQLDDFHDSIMIFQNLNE--LSVLSGEFNKEYELRKTKLMYPLTQSLSLH---FLQDYFLKILGFLDINLEFILVDNNSTNDGLMDRLSPYLSYFIDEKLKTEEDMIKLKDFLCIYVAILE-------NFKLN-------------------------------------------IEPLYKILVSIFEKFCSVSLRAFDDEFQILLNDDDFMPL | |||||||||||||
2 | 5yfpC | 0.06 | 0.05 | 0.81 | 1.21 | MAPalign | --MSSDPLQQVCDKGDLSLERVRDIKEQLLKEKSVVEYQLNKESDKYYGEVEESLKLLNLSKNSVTQINEVNKLGNDNRFAINRYDILFRATKLYETVNTTSSIYDRIYNFVALMEHIERLLVA-ELAEDAETGPHLLEIHFLLTSARDFQEMKLFSRLSGIISKFDKLLDGLTYD---IV-EM----ARAEQISLAIRLFKIYDLEERGYKHFLINGINNSISEMFGEMREVGDQKFDVLDNMDWIFNELIIVKEHIA----NCCP-PHWNIFEVYFDQYYKELHSLITDLVPETIII-LDILAFDKTFQDTLKQDK-----------------------------------------------------S--VI--GD-KEKETLFKDYLNLIVVKMTEWIGN-- | |||||||||||||
3 | 5yfpC | 0.08 | 0.07 | 0.86 | 4.99 | HHsearch | MSSDPLQQVCDLIKGDLSLERVRDIKEQLLKEKSVVEYQLNKESDKYYGEVEESLKLLNLSKNSVTSIKQQINEVNKLGNDNRFAINRY-DILFRATKLYETVNTTSSIYDRIYNFVALMEHIERLLVAELETGCPHLLEIHFLLTS-ARDFQEVVMAKEAQRTVMKLFSRL-SGIISKFDKLLDGLTYDRAEQISLAIRLFKIYDLEEREDLRNTARLYTRTAPRGYKHFLIGDQKFD----VLDNMDWIFNELIIVKEHIANCCPPHWNIFEVYFDQYYKELHSLITDLVE---SEPETIIILDILAFDKTFQDTLKQD--KS--------------------------------------------VIGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVPH | |||||||||||||
4 | 5yfpC | 0.09 | 0.07 | 0.86 | 1.63 | FFAS-3D | -SSDPLQQVCDLIKGDLSLERVRDIKEQLLKEKSVVEYQLNKESDKYYGEVEESLKLLNLSKNSVTSIKQQINEVNKLGNDNRFAINRY-DILFRATKLYETVNTTSSIYDRIYNFVALMEHIERLLVAELAEDALETLLEIHFLLTSARDFQEQRTVMKLFSRLSGIISKFDKLLDGLTYDIVEMARAEQISLAIRLFKIYDLEEREDLRIEAIGINNSISEMFGEMREKYVGDQKFDVL----DNMDWIFNELIIVKEHIANCCPPHWNIFEVYFDQYYKELHSLITDLVE---SEPETIIILDILAFDKTFQDTLKQDKSVIGDKE----------------------------------------------KETLFKDYLNLIVVKMTEWIGNLEKAEFDV-- | |||||||||||||
5 | 5yfpC2 | 0.13 | 0.05 | 0.40 | 1.76 | HHpred | ---------------------------------------------------------------------------------------------------------TSSIYDRIYNFVALMEHIERLLVAELETGCPHLLEIHFLLTS-ARDFQEVVMAKDAQRTVMKLFSRL-SGIISKFDKLLDGLTYDRAEQISLAIRLFKIYDLEERGYKHFLINGINNSMFGEMREKYVGDQKFDVLDNMD----WIFNELIIVKEHIANCCPPHWNI--------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 5yfpE | 0.07 | 0.06 | 0.85 | 1.18 | MAPalign | VETVIKNESKIVK--RVFEEKATHVQLFIQRVFAQKIPRFEVLLRNSLSINLAYVRILHGLFTLFGKFTKSLIDYFQLLSTTLEQCFADLFSHYLYDRSKYFGIEKRSLEAILVDM--TSKFTVNYDPNSPANYSLNDVDSMLKCVESTARVMAHLYILEILKIMFLGIDSYMEIALEVAYWKICKINKTAGVVFLKFISMSEILDLLIQKMEILIITVISTKFSAILCKQDFVPKSQELLDQDTLPAIEIVNILNLIFEQSKLKGKNLQTFIGEELYGLLLSH---YSH-FQVN-----SIGGVVVTKDIIGYQTAIEDWGV----------------------------------------------ASLIDKFATLRELANLFTVQPELLESLTKEGHLADI-- | |||||||||||||
7 | 5yfpE | 0.10 | 0.09 | 0.86 | 2.68 | HHsearch | KQLDPKPYIRTF---ESTLKELKNLNEETLNKRQYFSEQVATQEVIHSENVIKLSKDLHTTLLTFDKLDDRLTNVT-------QVVSPLGDKLETAIKKKQNYIQSVELIRRYNDFYSMSDIVEQLRLWKLNLKSVKLMKNLLILSSKLE-TSSIPKTINTKLVIEKYSEMMENELLENFNSAYREN------NFTKLNEIAIILNNFNGG--VNVIQSFINQH-----DYFIFINHSVIITSMQNLINDVETVIKNESKIVKRVFEEATHVIQLFIQRVFAKIEPRFEVLLRNS-LSISNLAYVRILHGLFTLFGKFTKSLIDYFQLLEIDD------------------------------SNQILSTTLEQCFADLFSHYLYKYFGIEKRSLEAILVDMTSKFT | |||||||||||||
8 | 5yfpF | 0.08 | 0.08 | 0.95 | 1.33 | FFAS-3D | -DPLSFDKWVPFLRRALDKNQLDPVIDELENSIEDNFQGLELQLLQDSDKLETSIDEIANIQGMVDTLSSEISKFQIRLSESANELIVKKQMYVNNKKISLKISEATILITKVVRILELSSKCQELITERKFFKVLQNLDSLEKLYLQEFKNYNFQFLIEIYNSIPFLQKVTKDECINLIRNSLNKLNLGEFFQLDDFHDSIMIFQNLNE--LSVLSGEFNKEYELRKTKLMYPKNKFTQSLSLHFLQDYFLKILLLYDINLNKATEFILEFWDGLMDRLSPYLSYFIDEKLKTEEDKLNIEPLYKILVSIFEFCSVSLRAFDDEFQI--------------LLNDDDFMPLSINDKTLYEKVLKICWLYPMTCTLAKKTYSKITAFLKTMDDIFNDIVNKKIRS-- | |||||||||||||
9 | 5yfpC1 | 0.05 | 0.01 | 0.25 | 1.37 | HHpred | -SSDPLQQVCDLIKGDLSLERVRDIKEQLLKEKSVVEYQLNKESDKYYGEVEESLKLLNLSKNSVTSIKQQINEVNKLGNDNRFAINRYD-ILFRATKLYETVNT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5h11A | 0.08 | 0.07 | 0.87 | 1.13 | MAPalign | LGSQLIQEFTAAQRMREVAAGYAHCVDVYIKQCEDIAILCQRVNKQVGEVFCSPETVMAKLIQSIFKIQAHVKERLDETRQYLKNLYDLYTRTTALAAKLDKHTFLSKLIYIDMERQYLQNRSGMILQETLLQEVVVLLQETRHAFERCNKLSDPADLPKNAFSIFLILVYLCVHIDYALEIGIPSADAKNLYFLDVVQQANTIFHLFMEVKLDTGIDRTLNCMIGQMKYILKTDFKPVMIQ-YTTACSKVCAYVGKQVERVRRSMD--GKNVDTVLTELGVRFHRLIHEHLQFSYSSMGGMLAICDVAEYRRSAKDF---R----------------------------------------------VPLVLQLFDTLHALCNLLVVCSEQLTNLDRNLLHAFV-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |