Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | RFLVHIYPCIPIINMSRFLAYQWDPKASPPDPLLLNAIYLVTARQLSPNDEVFSTLNISRESFIALCENTTRSLMDQEYAQPKMSTVQAMLLMTNLSNSKDSNVRWLTSGLAIRMAQDLGLHRSASRFKMSKEEEETRRRVWWACYCLDRWTCASLGRPLAIHDSDCDVEMPSTADLGFQDISRFAGANNIVKSMDQTYGAFTHLVRLSTILGHILKKLYTPKANAMGYGKNMHSTLKDLSDQLKSW |
1 | 6gypB | 0.11 | 0.10 | 0.85 | 1.17 | DEthreader | | FAMENLGALFGSIGDISELYLRVEQD-DGYWDALIWSVFTMCIYYMPVEAEIFSVYPLMQLVMCQNFARCSLFQLKDFMAHPDIRLVQAYLILATTTFPYDEPLANSLLTQCIHTFKNFHVDDFRLNDDVESIAKVTLGRIFYRLCGCDYLQSG-PRKPALHTEVDVYREENS--------------------------T-EVLYWKIISLDRDLDQ-YLNK--S--SKP--PLKTLDAIRRELDIF |
2 | 6p7vB | 0.12 | 0.11 | 0.91 | 1.19 | HHpred | | -YF-GFFTDISELQMERYWN-EYESADQILWDLVLRSVIVMTIYYMPAKSILSLKYPLKKYEIFDYCLRHTLNKVLRFTLPPDVRTLQIFLILSNTNFLQIYPSLNNILVHCIHLAKVLGIKDFKLKINDSRLQKLSMHNIWFRLSTVDYMRS-SPNKIIALHTDN-SSALTR--KTLIDS---ID---VYDV----ESNLEVLRWKITSLDRDLEVS-----EPSLKTLKAMKELLGLLDRKTSV- |
3 | 6gypB2 | 0.09 | 0.06 | 0.64 | 1.35 | DisCoVER | | QLMNFAMALYGSIGISELYLRVYWSVDGKYWDALIWSVFTMCIYMLAIFS-VYPNWEGMQLVMCQNFARCSLFQLKQCFMHPDIRLVQAYLILATTFPYDEPLLANSLLTQCIHTFKNFHFR-PLLNDDPESIAKVTLGRIFYRLCGCDYLQSGPR-KIALH------------------------------------------------------------------------------------- |
4 | 6gypB | 0.12 | 0.10 | 0.87 | 0.97 | MRFsearch | | --MENLGALGSIGDISELYLRYWDRRAGKYWDALIWSVFTMCIYYMPVEKLAEIFSDGMQLVMCQNFARCSLFQLKQCMAHPDIRLVQAYLILATTTFPYEPLLANSLLTQCIHTFKNFHVDDFRPLLNVESIAKVTLGRIFYRLCGCDYLQSGP-RKPIALHTEVSSLNVDVYRE---------------------ENSTEVLYWKIISLDRDLDQYLNKS-------SKPPLKTLDAIRRELDIF |
5 | 6gypB | 0.09 | 0.08 | 0.88 | 0.99 | SPARKS-K | | FAMENLGALYFGSIVEQYWDRRADKNHSVYWDALIWSVFTMCIYYMPGSNKRLNWEDGMQLVMCQNFARCSLFQLKQCMAHPDIRLVQAYLILATTFPYDEPLLANSLLTQCIHTFKNFHVDDFRPLLNDDSIAKVTLGRIFYRLCGCDYL----------QSGPRKPIALHTEVSSLNVDVYREENSTE------------VLYWKIISLDRDLDQYL---NKSSKPP----LKTLDAIRRELDIF |
6 | 2veqA | 0.09 | 0.09 | 0.98 | 1.26 | MAPalign | | FAMENLGALYGSIGLYLRVEQYNHSVDGKYWDALIWSVFTMCIYYMFSVYPLHEYLGSNKLVMCQNFARCSLFQLKQFMAHPDIRLVQAYLILATTFPYDEPLLANSLLTQCIHTFKNFHVFRPLLNDPVESIAKVTLGRIFYRLCGCDYLQSGPR-KPIALSTEVLYWKIISLDRDLDQYLNKSSKPPLKTLDAIRRELDIFFIALFQISTVSWKLFKM---YLIYYDTADSLLKVIHYSKVIISL |
7 | 2veqA | 0.10 | 0.10 | 1.00 | 1.02 | CEthreader | | QLMNFAMENLGALYISELYLRVEQYVDGKYWDALIWSVFTMCIYYMPVEKLAEIFSVYMQLVMCQNFARCSLFQLKQCMAHPDIRLVQAYLILATTFPYDEPLLANSLLTQCIHTFKNFHVDDFRPLLNDDSIAKVTLGRIFYRLCGCDYLQSGPRKEVLYWKIISLDRDLDQYLNKSSKPPLKTLSLEEDFRSNNSRFQKFIALFQISTVSWKLFKMYLIYYDTADSLLKVIHYSKVIISLIVNNF |
8 | 6p7vB1 | 0.12 | 0.10 | 0.82 | 0.85 | MUSTER | | HSLERLGWLYFFTDISELPYQMER-ADQILWDLVLRSVIVMTIYYMPVDIDAIEKYPLKKYEIFDYCLRHTLNKVLRTIFPPDVRTLQIFLILSNTFLQIYPSLGNNILVHCIHLAKVLGIKDFKLKINDSRLQKLSMHNIWFRLSTVDYMRS-SPNKIIAL-----HTDNSSALTRKTLIDSIDVYDVE-------------------------------------SNLEVLRWKITSLDRDLEVS |
9 | 6p7vB1 | 0.14 | 0.11 | 0.82 | 3.66 | HHsearch | | HSLERLGWLYFFTDISELPY-QMERYDQILWDLVLRSVIVMTIYYMPA-KSILSLVDIKKYEIFDYCLRHTLNKVLRFTLPPDVRTLQIFLILSNTNFLQIYPSLNNILVHCIHLAKVLGIKDFKLKIGSTRLQKLSMHNIWFRLSTVDYMRS-SPNKIIALH-----TDNSSALTR--KTLIDS------I-------------------------DVYDV----ESNLEVLRWKITSLDRDLEVS |
10 | 6gypB2 | 0.11 | 0.07 | 0.66 | 1.42 | FFAS-3D | | -AMENLGALYFIGDISELYLRVERRADKNHSVALIWSVFTMCIYYMPVEKPLHEYLGSNQLVMCQNFARCSLFQLKQCMAHPDIRLVQAYLILATTTFPDEPLLANSLLTQCIHTFKNFHVDDFRPLLNDDPIAKVTLGRIFYRLCGCD-YLQSGPRKPIALHTE---------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|