>PF03929 (301 residues) NIHLWLSLPLGILISIICLSGAALVFEQDITQALQRSIYRVTPPQKGAEALSPEALIECI QKQASDSLHLTALQLSHNPEETAFASFRETGKKRLSINPYTGKALGWTETYPFFQTMRKL HRWLMDPPPSKGEKSVGKVVVGITTLLMVFILISGLVIWIPRTRKALKNRLCVSCTKGWR RFWYDTHVSIGFYSTIFLLVMALTGLTWSFGWYRTAAYSLFGENPSASVHRVDKGKEKPR KDEVRITWKDAQPSAPQSMKGWFYAFHTGSWGGMFTKIVYFLAALSGGVLPLSGYYLWWK R |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NIHLWLSLPLGILISIICLSGAALVFEQDITQALQRSIYRVTPPQKGAEALSPEALIECIQKQASDSLHLTALQLSHNPEETAFASFRETGKKRLSINPYTGKALGWTETYPFFQTMRKLHRWLMDPPPSKGEKSVGKVVVGITTLLMVFILISGLVIWIPRTRKALKNRLCVSCTKGWRRFWYDTHVSIGFYSTIFLLVMALTGLTWSFGWYRTAAYSLFGENPSASVHRVDKGKEKPRKDEVRITWKDAQPSAPQSMKGWFYAFHTGSWGGMFTKIVYFLAALSGGVLPLSGYYLWWKR | |||||||||||||||||||
1 | 7a23I | 0.09 | 0.07 | 0.81 | 1.01 | CNFpred | FEFIVLILLSTCGMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSS-GILLFGCSMIYGSTGATHFD-------QLAKILTGYEITGA-RSSGIFMGILFIAVGFLFKITA-FHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGA----------TLQQIFFFCSIASMILGALAAMAQ--TKVKRLLAY----------------------------------SSIGHVGYICIGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVLALRQT | |||||||||||||
2 | 4zowA2 | 0.10 | 0.05 | 0.54 | 0.71 | DisCoVER | -DYKLVLKNGR-FVAGALALGFVSL--PLLAWIASPIIIEIFALIAGNLLLVRSLIIMGGW-PIMIGLLVAAAATVISSHAYLWMTAGL---S-IYAFGIGL-A------------NAGLVRLTL-----------------FA--SD-MSKGTVSAA---------------------------------------MGMLQMLIFTVGIEISK-----------------HAWLNGGNGLF--NL--------------------FNLVNG-------IL--WLSLMVIFL--------- | |||||||||||||
3 | 6a70B | 0.06 | 0.04 | 0.70 | 0.67 | DEthreader | G-RSLVYMLFLLVTLLASYGDAS---H--RL-SAIKQERAFAITRSEELWP-M-HVLLPYVH-GNQSSPELGPRLWSGSVFLELTRYSPAVLHAAVTLRL-----L-V---R-PF--AL--R---RLS-A---GLSLPLLTSVCLLLFAVHFAVAEARTWHEGRWRVLRLG----------------AWARWLLVALTAATALVRLAQLGA--D--------------R-WTRFVRGRPRRF-TSF-D------------Q-VAQLSSAAR-----G-LAASLLFLLLVKAAQQ--F---- | |||||||||||||
4 | 5xamA2 | 0.07 | 0.06 | 0.87 | 0.46 | CEthreader | MKPAKVITTLSVLLALAGAALVATRGLNYGVDFAPGTTLTARVDRQVTTEQLRNSVIGAGVSKVTGQSATIRDTTPGQQGQNFTVKVPELNDAEGQVLASETVGPAVGKELTQKTIYAVLLGLGLILVYVGFRFDFIMGLGSIIAAIHDVAIAMGLFSLLGLE-----------------------FTVASVAALLTLIGYSLNDSIIVSDRIRENMKTMRGHSYREI---------------VNAAINQTLSRTVMTSVSTMLPLISLLIFGGPVLRDFSLILLVGILVGTYSSIYIVAP | |||||||||||||
5 | 4ev6A | 0.04 | 0.03 | 0.72 | 0.68 | EigenThreader | PK--------------DEELYKLSKKIG----------------------ISVSDLQIGLD---EQEIPRVEEDE------DFYLIIYKTTTSLGIYIKNNLLLTIHDKIKAIGRLHKLIELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRK-------YLPIT---TEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAGMNFSYL-----PLANNPQGFWLVMALMVVIIMIFVYIFRRI------------------------ | |||||||||||||
6 | 4exrA | 0.10 | 0.05 | 0.45 | 0.50 | HHpred | ---------------------------------------ENLE--Q-DFKVPYTDAINIFKDKYKDA-DIVDLSLERDNKFVYTVEGVDNNEYK-KIDANTKDVLEDTEKLDSEDGVAR-KEKLDLN-DI-TPQQA-EIALKE---------QNGIVKEWSLDKDLDVTFYKIRIDKDKNEYDIKVDSKKG-------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6klsB | 0.12 | 0.10 | 0.78 | 0.40 | MRFsearch | --PYVFGILALVTFAIQIISGMVLILYYK---------------------PSIADAFDSATYSIMGEIPFGWLFR-----------------------------HIHATGANFFMAIVYLHMFTGIYYNAYKRPRELVWIVGWLIYFVLITALSGYLLWGFIVTTEIPGSLADAVTDVTLGRVFGSHVLIYPLILLALVGIHLVMWYLAVFFFFVFFHISHFLPPENFEPANPLKTPAH--------------IAPEWYLLGYYEVFRSIPSKFWGFVAFNALLLLLLLLPFFFVMFVIFM | |||||||||||||
8 | 3um7A | 0.09 | 0.07 | 0.78 | 0.72 | FFAS-3D | RSTTLLALLAL--VLLYLVSGALVFRALEAQRELGEVREKFLRAHPCVSDQELGLLIKEVADA---------------------------------LGGGADPETQSTSAWDLGSAFFFSGTIITTIGYGNVAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHPELVRVLSAMLFLLIGCLLFVLTPTFVFCYKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQ-------------------------------PLVWFWILLGLAYFASVLTTIGNWLRV | |||||||||||||
9 | 3dh4A | 0.05 | 0.04 | 0.82 | 0.72 | SPARKS-K | ALVYSIVVWTDVIQVFFLVLGGFMTTYMAVSFIGG---------TDGW-----FAGVSKMVDAAPGHFEMI---LDQSNPQ-----------------------YMNLPGIAVLIGGLWVANLYYWGFNAAKSVSEAQKGIVFAAFLKLIVPFIAAYVITSQLMASLGDIANLPSAANADKAYPWLTGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIY------KEYISPDSGDHK-------LVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWK | |||||||||||||
10 | 3gi8C | 0.10 | 0.09 | 0.91 | 1.00 | CNFpred | --DNIITGALSILLWMSYVISIALFAKGFAGYFLP---LINAPINTFNIAITEIGIVAFFTALSKAVGRAEFFIVLVALLILGLFIFAG----LITIHPSYVIPDLAP-IFASAIFFMGFGVITNASEHIEPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGE---------------LPEFFERKVWFK---TEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEV | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |