>PF03910 (355 residues) MSKRKIKEEMLQVIAPEIYGPPKKEEQDYKPRKLKRVKKKKKDDDDDELDDEVELLHATA PRRRVQWKGRRVRRVLRPGTTVVFTPGERSTRTYKRVYDEVYGDEDLLEQANERLGEFAY GKRHKDMLALPLDEGNPTPSLKPVTLQQVLPTLAPSEEKRGLKRESGDLAPTVQLMVPKR QRLEDVLEKMTVEPGLEPEVRVRPIKQVAPGLGVQTVDVQIPTTSSTSIATATEGMETQT SPVASAVADAAVQAAAAAASKTSTEVQTDPWMFRVSAPRRPRRSRKYGTASALLPEYALH PSIAPTPGYRGYTYRPRRRATTRRRTTTGTRRRRRRRQPVLAPISVRRVAREGGR |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSKRKIKEEMLQVIAPEIYGPPKKEEQDYKPRKLKRVKKKKKDDDDDELDDEVELLHATAPRRRVQWKGRRVRRVLRPGTTVVFTPGERSTRTYKRVYDEVYGDEDLLEQANERLGEFAYGKRHKDMLALPLDEGNPTPSLKPVTLQQVLPTLAPSEEKRGLKRESGDLAPTVQLMVPKRQRLEDVLEKMTVEPGLEPEVRVRPIKQVAPGLGVQTVDVQIPTTSSTSIATATEGMETQTSPVASAVADAAVQAAAAAASKTSTEVQTDPWMFRVSAPRRPRRSRKYGTASALLPEYALHPSIAPTPGYRGYTYRPRRRATTRRRTTTGTRRRRRRRQPVLAPISVRRVAREGGR | |||||||||||||||||||
1 | 4cwuT | 0.96 | 0.19 | 0.20 | 2.88 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APGLGVQTVDVQ----------------ETQTSPVASAVADAAVQAVAAAASKTSTEVQTDPWMFRVSAPRRPRGSRKYGAASALLPE----------------------------------------------------------- | |||||||||||||
2 | 4cwuT | 0.90 | 0.18 | 0.20 | 1.17 | MRFsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APGLGVQTVDVQETQTSP----------------VASAVADAAVQAVAAAASKTSTEVQTDPWMFRVSAPRRPRGSRKYGAASALLPE----------------------------------------------------------- | |||||||||||||
3 | 2etvA | 0.06 | 0.05 | 0.75 | 0.54 | DisCoVER | HDLLGREVEIPSNVNRIVAVG------------PGALRLIA------------YLATDVV-G----VEDFELRPYGRPYILAYLPSVGPG-GPGLPDLESLIL---QP--D---V-VFITYVAIQTGIPVVVLS-YGNLGTFEDEDLFRSIELA-----GILGREERAHVVDFIRAQSPTVYV--G---GIGYAHGIDSTEAYPPFVVLHARNVVDEGHFIDP---------------ELL---------------------VWNPEYIFIDENGLSLVLDYSYESL-SAVRGVYGILPYNTTNIGTALADAYFIGKVLYPERFTDIDPEADEIYLLYAQFGGFGIDLGRILR-- | |||||||||||||
4 | 5dkxA | 0.06 | 0.04 | 0.66 | 0.67 | DEthreader | KCDQS--C-----------PYKIAPETGSFKDGQYQA-IILKTIGETVRLPLTVSFAKVDYEMTVKYGP--S-----------KFEATIK--FAPFSIDFK-----------------GLLNIEHWRESVGL---DISFVGYEHVKQTPYRMYNADVFEYI--LDSPMTLGSIPFMQAHRKDS----------------FWLNTWVDITK-ITTPII---MNEPSVFNGMTFQNATYHALLSEHRRP-FVLTR-GA-WTGDNSMVQGIAGP-SWTAFRHAHLDG-----------Y--P--LPIDDQFF-------------VTDK-----SVDIWIPD-----------HVFAV | |||||||||||||
5 | 3n54B | 0.09 | 0.07 | 0.78 | 0.51 | CEthreader | ---------------------------DIEQLSFARGLAIDETNDHQYKLTYQNLLPQSGKPEFVNVTSHGVSDVSIKDPPVYSDHLKVIDDELRRSSYLMAARGNAADVFTKGNPKIMIPLRIGRASVYSQNGYSYVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQGGVMPTTDKGHPITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNFSKSYLHRLENIFEKKLERDVKQVMDKLQHEYKTDPLSDHIRIQHPDYWNKVKGHWDEIFSETDFKYDISFKIIN-------------------------------------------------- | |||||||||||||
6 | 3v8vA | 0.07 | 0.06 | 0.91 | 0.55 | EigenThreader | ---------------------MARGLEELLKTELENLGASLMWSRLASRIMLPLGECKVYSDLDLYLGVQATEMFNPGATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDSIALDLSGDGLHLGWQPGTPLLDPMCGSGKDVAQLTNPLPKGPYGTVLSNPPYGALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLCVQKNYHVAEMVADLPEYNVAVDRYADHKARQRLFDIIAATISVLGIA----PNKLVLKT---REKGEFLEVT---EY-NAHLWVTDYLDTGLFARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLE | |||||||||||||
7 | 5lfdA2 | 0.10 | 0.03 | 0.31 | 0.31 | HHpred | -------------------------------------------------------------------IAEQARAVASPGTEIVGLTPYFGAESVEGNFESYLAAIAVMDRVMAYDQPF--------DAVIQAGYGEHG--REGLQELLNVPVV-------DITEAAASTA----MFDGAAVTIAESLVRLGLSTSKIR------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 6m6aM | 0.17 | 0.05 | 0.27 | 0.35 | MRFsearch | --LTPDQKRALEEVLRDL-------------------------------------------------------ESPHPMDRLVSGD-----------------TEVALRAAHRVVGH----------------------------------------------------GAQVAFLVPTTLLAEQHGKTFRER---------------FQGLPVRVAVLSRF--------------------TPPKEEEAILKGLAE-------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4cwuT | 0.72 | 0.15 | 0.20 | 0.61 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APGLGVQTVDVQETQTSPVASAVADAAVQAVAAA----------------ASKTSTEVQTDPWMFRVSAPRRPRGSRKYGAASALLPE----------------------------------------------------------- | |||||||||||||
10 | 5jcss | 0.08 | 0.07 | 0.89 | 0.86 | SPARKS-K | LIQSSVYDSIFSEAADCFAGAIGEFKALEPIIQAIGESLDIASSRISLFLTQ-HVPTLENLDDSIKIGRAVLLKEKLNIQK---KSMNSTLFAFTNHSLRL------MEQISVQMTEPVTGKKMLAKKLTVINVSQQTETYKPKTVAVPIQENHKMLHRCFNKNQWKNVV--------KLWNEAYKMAQSILKITNTEN----------------------ENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENEVNLATSDLLTEPDSRSILLSEKGDAEPIKPDFRIFACMNPATDVRFTEIYVHSPERDITDLLSIIDGKYSVSDEWVGNDIAELYLEAKKL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |