>PF03904 (230 residues) MRKGQLIMSMKDIKNNKENPNTQMNSKSTGTPSSSTQNSLNNEELSELKRQNKLIVKYLA EIQENQKIREKEQKEITSELKEATKDFRDKSLKIRNDFVDVLQEKLKHVDTEELKDILGR GIYKVREENDRMLQEVKRSHEHYQTRQKYLFTGIGAMLLVFMLFALIMTIGSDFMSFLHV DTLQNAIAGKLKASEGFMTFVWYIAYGLPYVLAIGLFIGLYEWIRAKFHD |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MRKGQLIMSMKDIKNNKENPNTQMNSKSTGTPSSSTQNSLNNEELSELKRQNKLIVKYLAEIQENQKIREKEQKEITSELKEATKDFRDKSLKIRNDFVDVLQEKLKHVDTEELKDILGRGIYKVREENDRMLQEVKRSHEHYQTRQKYLFTGIGAMLLVFMLFALIMTIGSDFMSFLHVDTLQNAIAGKLKASEGFMTFVWYIAYGLPYVLAIGLFIGLYEWIRAKFHD | |||||||||||||||||||
1 | 6flnA | 0.03 | 0.02 | 0.58 | 0.74 | DisCoVER | ILDYNTAHNKVALSECYTVASVAEMPQNYRPHP--QR--------------FTYCSQVLGL--------------HC--Y---------------------K---KGIHYW--EV-----------------E--L---Q------KN-NF--CGVGIC-YGASWCVEWFNTKISAWVLL-NCDHGFVIFFAVADKVHLMYKFRVDFEALYPAF-WV--FSAGAT-LSI- | |||||||||||||
2 | 5k6lA | 0.05 | 0.04 | 0.78 | 0.83 | DEthreader | AVVSEGCVIYYKSGTGHVVGVPIVIIGRLSTEEDMLRRVRFDKMVVLPDALMVIWSGKLTDFGV-LVA--V--D------------------NMPVEIPQ-IA-SDDDLAC--RELGVSEYLRKMDIP----------------GLHKYGSDGVAKGCKAF-MT----QVNGMWTAGTDWWAVKNNTADNTLSQLEGKLN-RAE-LQRCAMNICEYAMNTAMKRLNDIKV | |||||||||||||
3 | 6h7wB | 0.09 | 0.09 | 0.97 | 0.36 | CEthreader | SRRAALEKMLNKIA----AHPTLQLDADLKLFLESESFNIDVKHKERKENKFVEQDDWFHDRRVYLDALENQLKALLKAMDNMVAQRKA-MAEAAADFSASLHALSTVELSPTLSGPLDALSELQLAIRDVYERQAQQDVLTFGIIIEEYIRLIGSVKQAFSQRQKAFHSWHSAESEL-MKKKAAQDKLLRQGKTQQDRLNQVNAEVIDAERKVHQARLLFEDMGRLLRS | |||||||||||||
4 | 5v6pA | 0.06 | 0.05 | 0.87 | 0.57 | EigenThreader | TYLLTFYCVYSATKTSVSFLQVTLKLNEGFNLMVLSIFILLNSTLLWQLLTKLILKDRLEALLQSINDSTTMKTLIFSRFSFNLVLLAVVDYQIITRCISSIYTNQKSDIE--STSLYLIQVMEFTMLLIDLLNLFLQTCL----NFWEFYRSQQSFMYEKAIDVFTRFLKTALHLSMLLLKDVVWDI-------------LALYQSGTSLWKIWRNN------------ | |||||||||||||
5 | 4wvmB | 0.12 | 0.08 | 0.71 | 0.41 | HHpred | --------------------------QMMAVPMTVWLVPMS----TPILRKVRNTLEAIVQVQMRCNDALDDPTNLFTEVQKKLSDFQKICDDHMSKLQATIAKKLFAIDEDALLNLFEENLQSNIESLNMWMEFEEREINVLRSCMDILT-KANGVLFKGLYDALCYVFTNVTK----NDVFLNVLNEFLDSPPDYW-------------------------------- | |||||||||||||
6 | 2w6dA2 | 0.10 | 0.08 | 0.85 | 0.38 | MRFsearch | --------ELKKRIDS------------------------VEPEFNKLTGIRDEFQKEIINTRDTQART--ISESFRSYVLNLGNTFENDFLGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQITEKLTGKGWAKWAMGLLSLSKGNLAGFADWKNILLNYFTVIGIGGIITAVTGILLGPIGFALLGLGVGFLQAQARRELVK | |||||||||||||
7 | 2tmaA1 | 0.14 | 0.09 | 0.65 | 0.94 | FFAS-3D | ------------------------------MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDERLATALQKLEEAEKAADESERGMKVIESRAQKD----------------EEKMEIQEIQLKEAK----------------------------------- | |||||||||||||
8 | 4uosA | 0.17 | 0.12 | 0.72 | 0.90 | SPARKS-K | -------------------------------GDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLEILKKAKEMAEKILKMVIELAEKILKKAKEMAEKIDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVG--------------------------------- | |||||||||||||
9 | 5ykeB | 0.11 | 0.08 | 0.77 | 0.69 | CNFpred | ------------------------------------------------NTIDQHIPSTLECLSRSTLLCVSALTVISYVTPVFLVALLPLACYFIQKYFRVASRDLQ-----QLDDTTQLPLLSHFAETVEGLTTIRAFR-YEARFQQKLLEYTDSNNIASLFLTAANRWLEVRMEYIGACVVLIAAATSISNSAGLVGLGLTYALMVSNYLNWMVRNLDMEIQLGAVKR | |||||||||||||
10 | 6f1tX | 0.06 | 0.04 | 0.68 | 1.00 | DEthreader | -------------------R-QKEKDLVLAARLGKALLERNQDMSRQYEQMHKELTDKLEHLEQEKHELRRRFENREGEWEGRVSELETDVKQLQDELERQQLHLREADRTRAVQELSEQNQRLLDQLSRASEVERQLSMQVHALKEDFREKNSSTNQHIIRLESLQAEIKMLSDR------------------------------------------------------ | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |