Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | DGTISCSDFPSGQGAVSLDWLGLGGWASIMDMNGNTATSCQDGYYCSYACSPGYAKTQWPSEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAVNKVSGSIAICGTDYPGSENMVVPTVVGAGSSQPINVIKEDSYYQWQGKKTSAQYYVNNAGVSVEDGCIWGTEGSGVGNWAPVVLGAGYTDGITYLSIIPNPNNKEAPNFNIKIVATDGSTVNGACSYENGVYSGSGSDGCTV |
1 | 5fidA | 0.14 | 0.07 | 0.48 | 0.77 | DisCoVER | | ----------------------------------------------------------------------------------------------AQQAIVHNNCQDTVYVQSFPYDGS-ATGPLTTLQAGQTFSEDFRK-----------SGSTVKVSK---TK---L-----------TSPFIGYSFSSPDYGYYELSSEWGN-PFADKRVTLSPGA--GCQDFNCAPNACYSRPDKKVYG- |
2 | 6kawA | 0.07 | 0.05 | 0.71 | 0.67 | DEthreader | | --------DAMAAFTVSFFRDSFRAASGVWRTE----TRT---TASFDVAADLSTTTV-------------VFDAPGRITGS-------LTHRSLGYPTLPQS-DREAEVA-----------AYWF------RPIAMANAT-VDLRMVLAFGGMDRS------WLPM-V-WGK--E--ATDALFVRAQ-A-GPYVMAVMRLVSKPYYQNTVNAALY-RDGKI-VSNASLPRTLEFKWSFDLVG |
3 | 3bykA | 0.13 | 0.13 | 1.00 | 0.67 | CEthreader | | NEKYQVPEFDSSTIKNISSAKGLDVWSWPLQNADGTVANYHGYHIVFALAGDDTSIYMFYQKVGETEWSGSATFTSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRAPHYVEDKGHKYLVFEANTGTEDGYQGEESLFNDKKRTAELANGALGMIELNDKVMKPLIASNTVTDEIKWYLFTDSRTSNDIYMLGYVSTGPYKPLNKTGLVL |
4 | 4qdgA | 0.08 | 0.06 | 0.76 | 0.60 | EigenThreader | | CPHGVS--------LRFIYDYNECLTLLVYDENGNENYRKKQGNYFVALACNKSSFLKYTPGEGTGYTDLQVELLAT-ADLY-------SVEKNTNIRVVLQQNGEPVFEITDDNENGVTYTPWAQGQDEGRAELSTSRLV------RDWYSPKLTVRRK---------------ADGVEIINIPLINYLLLESEWSIFFLSPN-LEWIKTYIKIN-------DWT-VRIN------------ |
5 | 2ahnA | 0.13 | 0.07 | 0.54 | 0.32 | HHpred | | -----------------------------------------------------------------------------------------------ATISFKNNCPYMVWPGTLTSDQKPLSTTGFELASQASFQLDTPVPWNGRFWA--RTGCST--DASGK---FVCATADCASGNGAIPPFNIPA--GGGQDFYDVS------LVDGFNMSVTPQGGDCKTASCPANLQKKGSDSVVACL- |
6 | 2q7zA | 0.15 | 0.11 | 0.74 | 0.48 | MRFsearch | | --CSRVCQPPPLHAERTQR----------------DKDNFSPGQEVFYSCEPGYDLR-----------GAASMRCTPGDWSPA----APTCEVKSLNGRVLFPVAKVDFVCDEGFQLK------------GSSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGLEVFPFGKAVNYTCDPHPDRGTSFDLIG-----------ESTIRCTSD-------PQGNGVWSSP-APRCGI |
7 | 2gsxA2 | 0.14 | 0.14 | 0.94 | 0.38 | FFAS-3D | | --NSSCGEGYKLSGSVYQECQGTIPWFM--EIRLCKEITCPPGTTVTYTCNPGPERGTWSGPAPLFYNDTVTFKCYSGFTLKGSSPEIPVCEAGSRVELVNTSCGHAYQMCQDAENGIWFKKIPLCKVIHVNGKHTGMMAENF----LYGNEVSYECD-QGFYLLGECR--SDSKGHGSWSGPSPQRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSCH-TDNTWVPGVPT-CI- |
8 | 4irtA | 0.09 | 0.09 | 0.97 | 0.65 | SPARKS-K | | VFRNNSLVTHGDEQYISYYDNDGYLVLGKRKLDSEQQGNVKDAHNIISIDGEGYIHVSFD----HHGHPLNYCRSAPGSLELGDKPTGVDEGNVTYPEFYPLSGGDLLFVYRSGSSGRGNLVNRYSLKEHNAYWQLYVDEKSWVWRETWHHDICYARSFDNIKLSNAEYACRLPQNCE--LINQTSSADAGGNPYIATYWRE--PNSDVPQYRIVWNDGKWHQRQITDRQTPFTLKGIPIARP |
9 | 1thvA | 0.16 | 0.08 | 0.52 | 0.87 | CNFpred | | -----------------------------------------------------------------------------------------------ATFEIVNRCSYTVWAAASKG-DAALDAGGRQLNSGESWTINVEP-NGGKIWARTD-SGICKTGDC--GGLLRCKRFG--RPPTTLAEFSLNQY---GKDYIDISNI----KGFNVPMDFSPTTRGCRGVRCAADI-------VGQCPA |
10 | 6l7eA | 0.05 | 0.03 | 0.64 | 0.67 | DEthreader | | SAYHDNGLTSVDH-KFNDG------------D--------DNSYQQ------------DTNNV------R-RVNNRYA-NALTLHHNQYQRLGKGFYATFVIPPYRWFKLYIKHVVD-NNSHIIYSGLTNINITLFIPL---DDVPLNQDYHAKVYMT-FKK-------------SPSDGTWWGPHFVRDKGIVTINPKSI------LTHFESVNVLNNI----------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|